GgaEX1049352 @ galGal4
Exon Skipping
Gene
ENSGALG00000012484 | RIF1
Description
replication timing regulatory factor 1 [Source:HGNC Symbol;Acc:HGNC:23207]
Coordinates
chr7:34653583-34662559:+
Coord C1 exon
chr7:34653583-34653697
Coord A exon
chr7:34654578-34654751
Coord C2 exon
chr7:34662460-34662559
Length
174 bp
Sequences
Splice sites
3' ss Seq
CTTAATTTCCCCCTCCTCAGGTC
3' ss Score
9.46
5' ss Seq
TAGGTACAT
5' ss Score
4.36
Exon sequences
Seq C1 exon
GTCTGCATACCATTAATCCAGAGCACTCTAAGTGTAGATTCAGCTGCTGCACTACAGGGAACTCCCTCACGTGTGCCATCCAATCCCAATTCAGCAAACCCTCCGCAGAAACCAG
Seq A exon
GTCCTTATCCATTTGCAAGTCCAGCCACACCAAGGATGAACTTGAATTCCAGTACTGCAGGACTGGTGGCAATTCCTTCCATTCAGCTCCTGGGAATTGAAATGCTGCTTCACTTCTTGATGGGACCAGAAGTTTTGGAGTTTGCAAAGCGAAACAAACTTGTGCTTAGTTTAG
Seq C2 exon
ACCTGTGTTAAGCCAAGCCAAACAGAAAATGCCCCTCTTGCTGCCTGGTTTTGAAAGCATTGAGATAGCTGACGAACAAAGCGGCCCATTCTCTGATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012484_MULTIEX1-8/22=7-22
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.487 A=0.153 C2=0.118
Domain overlap (PFAM):
C1:
PF122313=Rif1_N=PD(3.9=35.9)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCATACCATTAATCCAGAGCACT
R:
CATCAGAGAATGGGCCGCTTT
Band lengths:
210-384
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]