DreEX6036116 @ danRer10
Exon Skipping
Gene
ENSDARG00000062650 | rif1
Description
replication timing regulatory factor 1 [Source:ZFIN;Acc:ZDB-GENE-030131-3406]
Coordinates
chr9:22977798-22979098:+
Coord C1 exon
chr9:22977798-22977912
Coord A exon
chr9:22978640-22978816
Coord C2 exon
chr9:22978988-22979098
Length
177 bp
Sequences
Splice sites
3' ss Seq
TTCATCTTGCTATTCTCCAGGCA
3' ss Score
8.08
5' ss Seq
TGGGTAAGC
5' ss Score
8.84
Exon sequences
Seq C1 exon
GTTGGCGTGCCTCTATTGCACAGCACACTTCCTTCTGATTCTCCACTTCAGAGCCCGACTACACCTGCTCGAACCTCTAACCCAAGCAACGGCACACCTAACACCCCTAAGTCAG
Seq A exon
GCATTCCCTCCTGCAGCACGCCGAGCACGACTCCTCGCATGAATCTGAACAGCAGCATGCAGGCGCCTCAGTCCTATCGTTCCATTCAGCTCCTGGGACTAGAGATGCTCCTGCACTGGCTTGTGGGTCCAGAGGTCACAGTCACAGCTGCTCGAGAAAACCTTCAGCTCAGCCTGG
Seq C2 exon
AGCCCCTGACGCACCCGCTTTTTACCAGCCCTTCCACCTTCAGCAGACATGCTTCTACCCTCATATCTGCCAGCAAAGAAGGCATCATTACTGTAGGGAAGCATGCTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000062650-'14-22,'14-21,15-22=AN
Average complexity
A_S
Mappability confidence:
88%=75=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.731 A=0.333 C2=0.037
Domain overlap (PFAM):
C1:
PF122313=Rif1_N=PD(3.9=35.9)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTGGCGTGCCTCTATTGCA
R:
CTGGAGCATGCTTCCCTACAG
Band lengths:
226-403
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]