GgaEX1049352 @ galGal3
Exon Skipping
Gene
ENSGALG00000012484 | RIF1
Description
NA
Coordinates
chr7:36780133-36781668:+
Coord C1 exon
chr7:36780133-36780247
Coord A exon
chr7:36781128-36781301
Coord C2 exon
chr7:36781558-36781668
Length
174 bp
Sequences
Splice sites
3' ss Seq
CTTAATTTCCCCCTCCTCAGGTC
3' ss Score
9.46
5' ss Seq
TAGGTACAT
5' ss Score
4.36
Exon sequences
Seq C1 exon
GTCTGCATACCATTAATCCAGAGCACTCTAAGTGTAGATTCAGCTGCTGCACTACAGGGAACTCCCTCACGTGTGCCATCCAATCCCAATTCAGCAAACCCTCCGCAGAAACCAG
Seq A exon
GTCCTTATCCATTTGCAAGTCCAGCCACACCAAGGATGAACTTGAATTCCAGTACTGCAGGACTGGTGGCAATTCCTTCCATTCAGCTCCTGGGAATTGAAATGCTGCTTCACTTCTTGATGGGACCAGAAGTTTTGGAGTTTGCAAAGCGAAACAAACTTGTGCTTAGTTTAG
Seq C2 exon
AGCCTCTCCAGCACCCCCTGATCAGTAGCCCATCCTTTTTCTGTAAGCACGCCAGCACGTTTATAAATGCAGTTCAGGATGGATTTATTGCGGTTGGAAAAGAAGTTCCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012484-'15-14,'15-13,16-14=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.487 A=0.153 C2=0.000
Domain overlap (PFAM):
C1:
PF122313=Rif1_N=PD(3.9=35.9)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCTGCATACCATTAATCCAGAGCA
R:
CGGGAACTTCTTTTCCAACCG
Band lengths:
226-400
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]