MmuEX0052961 @ mm9
Exon Skipping
Gene
ENSMUSG00000026872 | Zeb2
Description
zinc finger E-box binding homeobox 2 [Source:MGI Symbol;Acc:MGI:1344407]
Coordinates
chr2:44965536-44968799:-
Coord C1 exon
chr2:44968343-44968799
Coord A exon
chr2:44966540-44966690
Coord C2 exon
chr2:44965536-44965677
Length
151 bp
Sequences
Splice sites
3' ss Seq
ATCTGTTACATCTTTTATAGCCC
3' ss Score
7.4
5' ss Seq
TAGGTACAA
5' ss Score
3.23
Exon sequences
Seq C1 exon
TGGAATTTCATTTCTTCCACTAAAGCGTTTGCGGAGACTTCAAGGTATAATCTATCCCAGATCCTTTCCCAGAGAGAAACTTGGCGATCACGTTTTCACATGATGCTCACGCTCAGGGCGCTTCAATTATCCCTCCCCACAAAGATAGGTGGCGCGTGTTTCAGGGTCTCTCTTCTCTCCCCTACAGAAAAGAAAAAGAAAAAAATGTCATTAGAAGAGGCGTAACACGTCAGTCCGTCCCCAGGTTTGTGTTTCCTGGAGTGGCCGAAAAGAGATCAGTTCTAACCTGCTCGGCAGGAATAACGGTCCTGCCTCCAGACACTCTTGGCGAGGTTTTGTTCAGTTTGCTCCGGGAGCTGTTTCTTCGCCTCCACCTTTTTCTCCCCCACACTTCGCGGCTTCTTCATGCTTTTTCTTCTCACCATTTCTGGCCAAAACTACAAACAAGACTTCACAG
Seq A exon
CCCGCTGTTTAAACTAATCCTCGAGGCACAGCGTCTTCCCACCCCGCGGAGTTTCAGGGCTCTCCTCTTCTCCGGCCTGCCTCCGAGGTTCCCCTTCTCCAAGTTTTGACAGTTTGAGCTGAAAGAATGCAGCGCCTCCCTCGATTTTTAG
Seq C2 exon
ATCGAGCCTGCGTGCTGCCGAAGCAGGGCGCCGAGTCCATGCGAACTGCCATCTGATCCGCTCTTATCAATGAAGCAGCCGATCATGGCGGATGGCCCCCGGTGCAAGAGGCGCAAACAAGCCAATCCCAGGAGGAAAAACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026872_MULTIEX1-2/3=1-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=1.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAGTTCTAACCTGCTCGGCA
R:
GAGCGGATCAGATGGCAGTTC
Band lengths:
245-396
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: