HsaEX0072574 @ hg19
Exon Skipping
Gene
ENSG00000169554 | ZEB2
Description
zinc finger E-box binding homeobox 2 [Source:HGNC Symbol;Acc:14881]
Coordinates
chr2:145274845-145277958:-
Coord C1 exon
chr2:145277506-145277958
Coord A exon
chr2:145275860-145276013
Coord C2 exon
chr2:145274845-145274986
Length
154 bp
Sequences
Splice sites
3' ss Seq
ATCTGTTACATCTTTTATAGCCC
3' ss Score
7.4
5' ss Seq
TAGGTACAA
5' ss Score
3.23
Exon sequences
Seq C1 exon
ATTTCATTTCTTCCACTAAAGCGTTTGCGGAGACTTCAAGGTATAATCTATCCCAGATCCTTTCCCAGAGAGAAACTTGGCGATCACGTTTTCACATGATGCTCACGCTCAGGGCGCTTCAATTATCCCTCCCCACAAAGATAGGTGGCGCGTGTTTCAGGGTCTCTCGTCTCTCTCCTACAGAAAAGAAAAAGAAAAAAATGTCATTAGAAGAGGCGTAACACGTCAGTCCGTCCCCAGGTTTGTGTTTCCTGGAGTGGCCGAAAGAGATCAGTTCTAACCTGCTCTGCAGGAATAACGGTCCTGCCTCCCGACACTCTTGGCGAGGTTTTTGTACAGTTTGCTCCGGGAGCTGTTTCTTCGCTTCCACCTTTTTCTCCCCCACACTTCGCGGCTTCTTCATGCTTTTTCTTCTCACCATTTCTGGCCAAAACTACAAACAAGACTTCGCAG
Seq A exon
CCCCCTGTTTAAACTAATCCTCGAGGCACAGCATCTTCCCAACCTCCACCGAGTTTTCAGGATTCTCCTCCTCTCCTGCCTGCCTCCGAGGTCCCCCTTCTCCAAGTTTTGACAGTTTCAACTGAAAAAATGCAGCGCCTCTCTCGATTTTTAG
Seq C2 exon
ATCGAGCCTGCGTGCTGCCGAAGCAGGGCGCCGAGTCCATGCGAACTGCCATCTGATCCGCTCTTATCAATGAAGCAGCCGATCATGGCGGATGGCCCCCGGTGCAAGAGGCGCAAACAAGCCAATCCCAGGAGGAAAAACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000169554_MULTIEX2-1/4=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=1.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAGTGGCCGAAAGAGATCA
R:
ATCAGATGGCAGTTCGCATGG
Band lengths:
258-412
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)