MmuEX0035439 @ mm9
Exon Skipping
Gene
ENSMUSG00000026785 | Pkn3
Description
protein kinase N3 [Source:MGI Symbol;Acc:MGI:2388285]
Coordinates
chr2:29945359-29945931:+
Coord C1 exon
chr2:29945359-29945501
Coord A exon
chr2:29945588-29945695
Coord C2 exon
chr2:29945851-29945931
Length
108 bp
Sequences
Splice sites
3' ss Seq
CTGAACCCCAATTTCCACAGTGT
3' ss Score
5.84
5' ss Seq
AAGGTGAGA
5' ss Score
8.68
Exon sequences
Seq C1 exon
GAATTGGCTTTGGTGACCGGACCAGCACGTTCTGTGGCACCCCGGAGTTCCTGGCCCCCGAGGTTTTGACTCAGGAGGCTTACACGCGTGCTGTGGACTGGTGGGGGCTGGGTGTGCTGCTCTATGAGATGTTAGTGGGTGAG
Seq A exon
TGTCCATTCCCGGGGGACACAGAAGAGGAGGTATTTGAATGCATCGTCAGTGCTGATGTCCCATGTCCCCACTTTCTGTCAGTGCAAGGGCTCGAACTCATTCAGAAG
Seq C2 exon
CTCCTCCAGAAGTCCCCAGAGAAGCGTCTAGGGGCAGGAGAACGGGACGCCGAGGAGATCAAGGTTCAACCATTCTTCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026785_CASSETTE3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.111
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=FE(18.1=100)
A:
PF0006920=Pkinase=FE(13.5=100)
C2:
PF0006920=Pkinase=PD(9.6=92.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GAATTGGCTTTGGTGACCGGA
R:
CCTGAAGAATGGTTGAACCTTGA
Band lengths:
224-332
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: