BtaEX6046495 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000010195 | PKN3
Description
Bos taurus protein kinase N3 (PKN3), mRNA. [Source:RefSeq mRNA;Acc:NM_001205566]
Coordinates
chr11:99244959-99245510:+
Coord C1 exon
chr11:99244959-99245101
Coord A exon
chr11:99245190-99245297
Coord C2 exon
chr11:99245430-99245510
Length
108 bp
Sequences
Splice sites
3' ss Seq
GCTGAGCCCCCTCCCTGCAGTGC
3' ss Score
6.62
5' ss Seq
AAGGTAATT
5' ss Score
8.83
Exon sequences
Seq C1 exon
GGATCGGCTTCGGGGACCGGACGAGCACCTTCTGCGGCACCCCGGAGTTTCTGGCCCCCGAGGTGCTGACTCAGGAGGCCTACACGCGGGCTGTGGACTGGTGGGGACTGGGCGTGCTGCTCTATGAGATGCTGGTGGGCGAG
Seq A exon
TGCCCGTTTCCAGGGGACACCGAGGAGGAGGTGTTTGATTGCATCGTCAATGCGGAAGCCCCGTACCCCCGCTTTCTGTCGGTGCAAGGCCTCGAGCTTATTCAGAAG
Seq C2 exon
CTCCTCCAGAAGTGCCCCGAGAAGCGCCTGGGGGCAGGCGAGCGAGATGCTGAGGAAATCAAGACCCAGCCTTTCTTCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000010195-'24-31,'24-29,25-31=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.074
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=FE(18.1=100)
A:
PF0006920=Pkinase=FE(13.5=100)
C2:
PF0006920=Pkinase=PD(9.6=92.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GACCGGACGAGCACCTTCT
R:
CCTGAAGAAAGGCTGGGTCTT
Band lengths:
210-318
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]