GgaEX0006436 @ galGal3
Exon Skipping
Gene
ENSGALG00000004689 | PKN3
Description
NA
Coordinates
chr17:5861460-5862576:+
Coord C1 exon
chr17:5861460-5861602
Coord A exon
chr17:5861854-5861961
Coord C2 exon
chr17:5862496-5862576
Length
108 bp
Sequences
Splice sites
3' ss Seq
AAAAATTGTCACAATTGCAGTCA
3' ss Score
4.32
5' ss Seq
AAGGTAATG
5' ss Score
8.99
Exon sequences
Seq C1 exon
GAATAGGTTTTGGAGACCGCACAAACACCTTCTGCGGCACTCCCGAATTTCTGGCTCCGGAAGTCCTCACAGACATCTCATACACTCGGGCAGTAGACTGGTGGGGACTGGGTGTACTCATCTATGAGATGCTTGTTGGTGAG
Seq A exon
TCACCATTTCCTGGAGATGATGAGGAAGAAGTCTTTGATAGCATTGTCAATGATGAAGTCCAGTATCCACGATTCCTTTCATCAGAGGCACTTTCTATAATCCGCAAG
Seq C2 exon
CTTCTTCGGAAGTGTCCAGAGCGTAGACTAGGAGCAGGGGAAAAAGATGCAGAAGAGATTAAAATCCAACCCTTTTTTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004689_MULTIEX2-2/2=1-C2
Average complexity
S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.028 C2=0.000
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=FE(18.1=100)
A:
PF0006920=Pkinase=FE(13.5=100)
C2:
PF0006920=Pkinase=PD(9.6=92.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GAATAGGTTTTGGAGACCGCACA
R:
AAAGGGTTGGATTTTAATCTCTTCTG
Band lengths:
218-326
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]