RnoEX6011825 @ rn6
Exon Skipping
Gene
ENSRNOG00000011317 | Pkn2
Description
protein kinase N2 [Source:RGD Symbol;Acc:620146]
Coordinates
chr2:248738274-248743300:-
Coord C1 exon
chr2:248743158-248743300
Coord A exon
chr2:248738560-248738667
Coord C2 exon
chr2:248738274-248738354
Length
108 bp
Sequences
Splice sites
3' ss Seq
TATCTTCTTATTTCGTCTAGTCT
3' ss Score
5.61
5' ss Seq
AGGGTAAGA
5' ss Score
9.21
Exon sequences
Seq C1 exon
GAATGGGGTATGGAGATAGGACAAGCACATTTTGTGGTACTCCTGAATTTCTTGCCCCAGAAGTATTAACAGAAACGTCGTACACAAGGGCTGTAGATTGGTGGGGCCTTGGCGTACTTATATATGAAATGCTCGTCGGAGAG
Seq A exon
TCTCCCTTTCCTGGTGATGATGAAGAAGAGGTTTTTGACAGTATTGTAAATGACGAAGTAAGGTATCCAAGGTTCTTATCTACAGAAGCCATTTCCATAATGAGAAGG
Seq C2 exon
CTGTTGAGGAGGAATCCTGAGCGGCGCCTGGGAGCTGGTGAGAAAGATGCCGAGGATGTAAAGAAGCACCCGTTTTTCCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000011317-'46-37,'46-36,48-37=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.028 C2=0.185
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=FE(18.1=100)
A:
PF0006920=Pkinase=FE(13.5=100)
C2:
PF0006920=Pkinase=PD(9.6=92.6)
Main Skipping Isoform:
ENSRNOT00000031748fB10796
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GGGGTATGGAGATAGGACAAGCA
R:
CGGAAAAACGGGTGCTTCTTT
Band lengths:
219-327
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]