DreEX6021836 @ danRer10
Exon Skipping
Gene
ENSDARG00000101293 | PKN2 (1 of 2)
Description
protein kinase N2 [Source:HGNC Symbol;Acc:HGNC:9406]
Coordinates
chr6:25325161-25328294:-
Coord C1 exon
chr6:25328152-25328294
Coord A exon
chr6:25325421-25325528
Coord C2 exon
chr6:25325161-25325241
Length
108 bp
Sequences
Splice sites
3' ss Seq
ATTTCTTTCTCTATTCTCAGTCC
3' ss Score
9.14
5' ss Seq
AGGGTAAGT
5' ss Score
10.45
Exon sequences
Seq C1 exon
GAATGGGCTTTAAAGACCGTACTAGTACGTTCTGTGGCACTCCTGAGTTCTTGGCACCTGAAGTTTTAACCGAGACGTCGTACACTCGAGCGGTGGACTGGTGGGGTCTCGGAGTGCTCATCTTTGAGATGCTGGTTGGAGAG
Seq A exon
TCCCCTTTCCCTGGTGATGATGAAGAGGAGGTGTTTGACAGTATAGTTAATGATGAAGTCCGCTATCCCAAATATCTCTCCACAGAAGCTATTTCCATAATGAGAAGG
Seq C2 exon
CTGTTAAGGCGAAATCCAGAGCGGCGTCTTGGCGCAGGAGAACGAGATGCGGAGGAAGTAAAGAGGCATCCTTTCTTCAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000101293-'23-20,'23-19,24-20=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.028 C2=0.185
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=FE(18.1=100)
A:
PF0006920=Pkinase=FE(13.5=100)
C2:
PF0006920=Pkinase=PD(9.6=92.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GGGCTTTAAAGACCGTACTAGT
R:
TCTGAAGAAAGGATGCCTCTTT
Band lengths:
220-328
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]