GgaEX0008904 @ galGal4
Exon Skipping
Gene
ENSGALG00000006237 | PKN2
Description
protein kinase N2 [Source:HGNC Symbol;Acc:HGNC:9406]
Coordinates
chr8:14118370-14121335:-
Coord C1 exon
chr8:14121193-14121335
Coord A exon
chr8:14119741-14119848
Coord C2 exon
chr8:14118370-14118450
Length
108 bp
Sequences
Splice sites
3' ss Seq
GTTTATCACTTCAATTATAGTCT
3' ss Score
4.81
5' ss Seq
CGGGTAAGA
5' ss Score
9.84
Exon sequences
Seq C1 exon
GAATGGGATTTGGAGACAGAACAAGCACATTCTGTGGCACACCAGAATTCCTTGCTCCAGAGGTGCTGACAGAAACTTCCTATACAAGAGCTGTAGACTGGTGGGGTCTTGGTGTCCTTATCTATGAGATGCTTGTGGGTGAG
Seq A exon
TCTCCTTTCCCTGGAGATGATGAAGAAGAAGTGTTTGACAGTATTGTAAACGATGAAGTAAGATATCCACGATTTCTGTCTACAGAAGCCATCTCTATAATGAGACGG
Seq C2 exon
CTGCTACGAAGAAATCCAGAGCGACGTCTTGGAGCTGGAGAGAAAGATGCTGAGGATGTAAAGAAGCATCATTTCTTCCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006237_MULTIEX1-2/2=1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.148
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=FE(18.1=100)
A:
PF0006920=Pkinase=FE(13.5=100)
C2:
PF0006920=Pkinase=PD(9.6=92.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GGGATTTGGAGACAGAACAAGCA
R:
CCGGAAGAAATGATGCTTCTTT
Band lengths:
220-328
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]