GgaEX0008904 @ galGal3
Exon Skipping
Description
NA
Coordinates
chr8:15877072-15880057:-
Coord C1 exon
chr8:15879915-15880057
Coord A exon
chr8:15878463-15878570
Coord C2 exon
chr8:15877072-15877172
Length
108 bp
Sequences
Splice sites
3' ss Seq
GTTTATCACTTCAATTATAGTCT
3' ss Score
4.81
5' ss Seq
CGGGTAAGA
5' ss Score
9.84
Exon sequences
Seq C1 exon
GAATGGGATTTGGAGACAGAACAAGCACATTCTGTGGCACACCAGAATTCCTTGCTCCAGAGGTGCTGACAGAAACTTCCTATACAAGAGCTGTAGACTGGTGGGGTCTTGGTGTCCTTATCTATGAGATGCTTGTGGGTGAG
Seq A exon
TCTCCTTTCCCTGGAGATGATGAAGAAGAAGTGTTTGACAGTATTGTAAACGATGAAGTAAGATATCCACGATTTCTGTCTACAGAAGCCATCTCTATAATGAGACGG
Seq C2 exon
CTGCTACGAAGAAATCCAGAGCGACGTCTTGGAGCTGGAGAGAAAGATGCTGAGGATGTAAAGAAGCATCATTTCTTCCGGGTGAGTCAAAGTCAGCATTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006237-'20-20,'20-19,21-20
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GAATGGGATTTGGAGACAGAACA
R:
ATGCTGACTTTGACTCACCCG
Band lengths:
242-350
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]