BtaEX6016736 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000021900 | PKN2
Description
protein kinase N2 [Source:HGNC Symbol;Acc:HGNC:9406]
Coordinates
chr3:55232193-55236450:-
Coord C1 exon
chr3:55236308-55236450
Coord A exon
chr3:55232742-55232849
Coord C2 exon
chr3:55232193-55232273
Length
108 bp
Sequences
Splice sites
3' ss Seq
CTCAGGGATATTTCTTCTAGTCT
3' ss Score
2.5
5' ss Seq
AGGGTAAGA
5' ss Score
9.21
Exon sequences
Seq C1 exon
GAATGGGATATGGAGACAGAACAAGCACATTTTGTGGCACTCCTGAGTTTCTTGCCCCAGAAGTTTTAACAGAAACATCCTATACAAGGGCTGTAGATTGGTGGGGCCTTGGTGTCCTTATATATGAAATGCTCGTTGGTGAG
Seq A exon
TCTCCCTTCCCTGGTGATGATGAAGAGGAGGTCTTCGACAGTATTGTAAATGATGAAGTAAGGTATCCAAGGTTCTTATCTACAGAAGCCATTTCAATAATGAGAAGG
Seq C2 exon
TTATTAAGAAGAAATCCTGAGCGACGCCTTGGAGCTGGTGAAAAAGATGCAGAGGATGTGAAAAAACACCCATTTTTCCGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021900-'34-30,'34-29,35-30=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.028 C2=0.185
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=FE(18.1=100)
A:
PF0006920=Pkinase=FE(13.5=100)
C2:
PF0006920=Pkinase=PD(9.6=92.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAGACAGAACAAGCACATT
R:
TCACATCCTCTGCATCTTTTTCAC
Band lengths:
194-302
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]