RnoEX6059932 @ rn6
Exon Skipping
Gene
ENSRNOG00000004131 | Pkn1
Description
protein kinase N1 [Source:RGD Symbol;Acc:69308]
Coordinates
chr19:24804162-24804847:-
Coord C1 exon
chr19:24804705-24804847
Coord A exon
chr19:24804340-24804447
Coord C2 exon
chr19:24804162-24804242
Length
108 bp
Sequences
Splice sites
3' ss Seq
CGGCTTTTTCTGCCCCACAGTCT
3' ss Score
9.01
5' ss Seq
AGGGTAGGC
5' ss Score
7.26
Exon sequences
Seq C1 exon
GGATGGGCTATGGGGACCGGACCAGCACATTCTGCGGAACTCCGGAGTTCCTGGCGCCGGAAGTGCTCACAGACACATCCTACACTCGAGCCGTGGACTGGTGGGGACTGGGTGTATTGCTCTATGAGATGCTGGTTGGAGAG
Seq A exon
TCTCCGTTCCCTGGGGACGACGAGGAGGAAGTATTTGACAGCATCGTCAATGATGAGGTTCGTTATCCCCGCTTCCTGTCTGCGGAGGCCATCGGCATCATGAGAAGG
Seq C2 exon
CTACTGCGGAGGAACCCAGAGCGGAGGTTGGGATCCACTGAGCGTGATGCAGAAGATGTGAAAAAACAGCCTTTCTTCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000004131-'28-43,'28-41,30-43=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.028 C2=0.333
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=FE(18.1=100)
A:
PF0006920=Pkinase=FE(13.5=100)
C2:
PF0006920=Pkinase=PD(9.6=92.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GACCGGACCAGCACATTCTG
R:
TTTTTCACATCTTCTGCATCACGC
Band lengths:
194-302
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]