BtaEX6037383 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000017037 | PKN1
Description
Bos taurus protein kinase N1 (PKN1), mRNA. [Source:RefSeq mRNA;Acc:NM_001080246]
Coordinates
chr7:12402953-12403860:-
Coord C1 exon
chr7:12403718-12403860
Coord A exon
chr7:12403124-12403231
Coord C2 exon
chr7:12402953-12403033
Length
108 bp
Sequences
Splice sites
3' ss Seq
CCAAGCTCTCCTTGTCCCAGTCC
3' ss Score
5.13
5' ss Seq
AGGGTAAGG
5' ss Score
9.16
Exon sequences
Seq C1 exon
GGATGGGCTATGGAGACCGGACCAGCACTTTCTGTGGGACCCCAGAGTTCCTGGCACCTGAGGTGCTGACGGACACGTCGTACACTCGTGCGGTGGACTGGTGGGGACTGGGCGTGTTGCTCTATGAAATGCTGGTTGGTGAG
Seq A exon
TCCCCATTCCCAGGGGATGATGAGGAGGAGGTATTTGACAGCATCGTCAACGATGAGGTTCGCTACCCCCGCTTCCTGTCAGCTGAAGCCATTGGCATCATGCGCAGG
Seq C2 exon
CTCCTGCGGAGGAATCCAGAGCGGAGGTTGGGATCCAGCGAGAGGGATGCTGAGGATGTGAAAAAACAGCCTTTCTTCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000017037-'34-34,'34-33,35-34=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.028 C2=0.296
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=FE(18.1=100)
A:
PF0006920=Pkinase=FE(13.5=100)
C2:
PF0006920=Pkinase=PD(9.6=92.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GGCTATGGAGACCGGACCAG
R:
TTTTCACATCCTCAGCATCCCT
Band lengths:
202-310
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]