MmuEX6036730 @ mm9
Exon Skipping
Gene
ENSMUSG00000057672 | Pkn1
Description
protein kinase N1 [Source:MGI Symbol;Acc:MGI:108022]
Coordinates
chr8:86194638-86195340:-
Coord C1 exon
chr8:86195198-86195340
Coord A exon
chr8:86194821-86194928
Coord C2 exon
chr8:86194638-86194718
Length
108 bp
Sequences
Splice sites
3' ss Seq
CCGCATCCTCTGCCCCCCAGTCT
3' ss Score
6.29
5' ss Seq
AGGGTAGGC
5' ss Score
7.26
Exon sequences
Seq C1 exon
GGATGGGCTATGGGGACCGGACCAGCACGTTCTGCGGAACTCCGGAGTTCCTGGCGCCGGAAGTGCTCACAGACACATCCTACACGCGAGCAGTGGACTGGTGGGGACTGGGCGTGCTGCTCTATGAGATGTTGGTTGGAGAG
Seq A exon
TCTCCGTTCCCTGGGGATGATGAGGAGGAGGTATTTGACAGCATTGTCAACGACGAAGTTCGCTATCCCCGCTTCCTGTCTGCAGAGGCCATCGGCATCATGAGAAGG
Seq C2 exon
CTACTGCGGAGGAACCCGGAGCGGAGGCTGGGGTCCACTGAGCGCGATGCAGAAGATGTGAAAAAACAGCCTTTCTTCCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000057672-'28-28,'28-27,30-28=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.005 A=0.028 C2=0.333
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=FE(18.1=100)
A:
PF0006920=Pkinase=FE(13.5=100)
C2:
PF0006920=Pkinase=PD(9.6=92.6)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GACCGGACCAGCACGTTCT
R:
TTTTTCACATCTTCTGCATCGCG
Band lengths:
194-302
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: