DreEX6032867 @ danRer10
Exon Skipping
Gene
ENSDARG00000060184 | pkn1a
Description
protein kinase N1a [Source:ZFIN;Acc:ZDB-GENE-061207-17]
Coordinates
chr1:45139132-45139663:+
Coord C1 exon
chr1:45139132-45139274
Coord A exon
chr1:45139357-45139464
Coord C2 exon
chr1:45139583-45139663
Length
108 bp
Sequences
Splice sites
3' ss Seq
ATCTGAAACTGTCTTGCCAGTCC
3' ss Score
4.62
5' ss Seq
AGGGTAAAT
5' ss Score
5.83
Exon sequences
Seq C1 exon
GTATGGGTTTTGGGGACCGGACCAGTACGTTCTGCGGGACTCCAGAGTTTCTGGCTCCAGAGGTTTTGACAGACACATCGTACACCCGTGCTGTGGACTGGTGGGGTCTCGGAGTGCTTATATATGAAATGTTGGTGGGAGAG
Seq A exon
TCCCCATTCCCAGGTGATGACGAAGAGGAAGTTTTTGACAGCATAGTGAATGATGAAGTTCGATACCCCAGGTTCCTGTCCGCAGAGGCCATTGGCATCATGAGGAGG
Seq C2 exon
TTACTAAGGAGAAATCCAGAAAGACGACTGGGCTCCAGTGAGAAAGATGCAGAAGATGTAAAGAAACAGCCTTTCTTCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000060184-'22-24,'22-22,23-24=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.028 C2=0.259
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=FE(18.1=100)
A:
PF0006920=Pkinase=FE(13.5=100)
C2:
PF0006920=Pkinase=PD(9.6=92.6)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GGACCGGACCAGTACGTTCT
R:
AGGCTGTTTCTTTACATCTTCTGCA
Band lengths:
202-310
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]