DreEX0055882 @ danRer10
Exon Skipping
Gene
ENSDARG00000079585 | pkn3
Description
protein kinase N3 [Source:ZFIN;Acc:ZDB-GENE-030131-1902]
Coordinates
chr5:31230606-31232465:-
Coord C1 exon
chr5:31232323-31232465
Coord A exon
chr5:31230759-31230866
Coord C2 exon
chr5:31230606-31230686
Length
108 bp
Sequences
Splice sites
3' ss Seq
TATCCTCTTATGGCCGCCAGTCT
3' ss Score
3.8
5' ss Seq
AAGGTAACA
5' ss Score
8.92
Exon sequences
Seq C1 exon
GTATGGGATATGGAGATCGTACATCAACCTTTTGTGGCACCCCAGAGTTTCTGGCTCCAGAGGTTTTGACAGACAGCAATTACACCCGTGCAGTGGACTGGTGGGGTCTGGGTGTGCTCATCTATGAGATGCTCGTTGGAGAG
Seq A exon
TCTCCATTCCCTGGTGATGATGAAGAGGAGGTGTTTGACAGCATAGTGAATGATGAAGTGCGCTACCCCAGGTTTATGTCTCCAGAGTCAGTCTCCGTTATCCAAAAG
Seq C2 exon
CTGCTGCAGAAGAACTCTGAAAAACGACTGGGGGCAGGAGAGCAAGATGCCAACGAAGTCAAGAAACACCGTTTTTTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000079585_CASSETTE1
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.028 C2=0.185
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=FE(18.1=100)
A:
PF0006920=Pkinase=FE(13.5=100)
C2:
PF0006920=Pkinase=PD(9.6=92.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GTATGGGATATGGAGATCGTACATCA
R:
AAAACGGTGTTTCTTGACTTCGT
Band lengths:
218-326
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]