RnoEX6016252 @ rn6
Exon Skipping
Gene
ENSRNOG00000025892 | Set
Description
SET nuclear proto-oncogene [Source:RGD Symbol;Acc:1307467]
Coordinates
chr3:8655298-8655871:+
Coord C1 exon
chr3:8655298-8655440
Coord A exon
chr3:8655525-8655632
Coord C2 exon
chr3:8655791-8655871
Length
108 bp
Sequences
Splice sites
3' ss Seq
TGCTGATCCCCAGTCTCCAGTGT
3' ss Score
-1.45
5' ss Seq
AAGGTGAGA
5' ss Score
8.68
Exon sequences
Seq C1 exon
GAATTGGCTTTGGTGACCGGACCAGCACTTTCTGTGGTACCCCAGAGTTCCTGGCTCCTGAGGTTTTGACTCAGGAGGCTTACACTCGGGCTGTGGACTGGTGGGGGCTCGGTGTGCTGCTCTATGAGATGTTAGTGGGTGAG
Seq A exon
TGTCCGTTCCCAGGGGACACGGAAGACGAGGTGTTTGAATGCATCGTCAATGCTGATGTCCCATGTCCCCACTTCCTGTCAGCTCAAGGCCTCGAGCTCATTCAGAAG
Seq C2 exon
CTCCTCCAGAAGTCCCCAGAGAAGCGTCTAGGGGCAGGAGAGCGGGACGCCGAGGAGATCAAGGTTCAGCCATTCTTCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000025892-'49-49,'49-45,50-49=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.111
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=FE(18.1=100)
A:
PF0006920=Pkinase=FE(13.5=100)
C2:
PF0006920=Pkinase=PD(9.8=92.6)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GAATTGGCTTTGGTGACCGGA
R:
CCTGAAGAATGGCTGAACCTTGA
Band lengths:
224-332
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]