MmuINT0111950 @ mm9
Intron Retention
Gene
ENSMUSG00000001855 | Nup214
Description
nucleoporin 214 [Source:MGI Symbol;Acc:MGI:1095411]
Coordinates
chr2:31902923-31906668:+
Coord C1 exon
chr2:31902923-31903094
Coord A exon
chr2:31903095-31906528
Coord C2 exon
chr2:31906529-31906668
Length
3434 bp
Sequences
Splice sites
5' ss Seq
CGGGTAAGC
5' ss Score
9.14
3' ss Seq
CCCATTCTCACCGCACCCAGGTT
3' ss Score
6.05
Exon sequences
Seq C1 exon
GTGGCTTCGGTGCTGCTCCAGTGTTTGGCAGCCCTCCTACTTTTGGGGGATCCCCTGGGTTTGGAGGGGTGCCAGCATTCGGTTCAGCCCCAGCCTTTACAAGCCCTCTGGGCTCGACGGGAGGCAAAGTGTTCGGAGAGGGTACTGCGGCTGCCAGCGCAGGCGGATTCGG
Seq A exon
GTAAGCTGCAGGTGGGACCTGGGAAAACCACAAACTTGTGCCAGCCCAAAGCACCAGGGCCTGTCATTCTTACATTCTCTAAACCACACAGTGACCTGGCGGCCTTGCCTTTAAGTAGACAAAAAAAGTTGCTAGATGTCTTTTTCTCAGGACAAGGCACATTGTGAGCAGGTTCTTAAATCATTGGCCACAGCATTGCTGGCTGTCAGTGCACAGCATGCAGGACATCAATAACCTGTTCTCTGGACCAGGTTTAGCTGCAGCCAGGTCTGTTTCTCAGGTGGTCCTTATATTAGAAAGTCCTGAAGAAAGAGTTAGGATTGTTTTCTTGAGGTGCCAGTTGGTCTTTAGCAAACAACTCCTAGAACATAGGACACCAATGGGATAACCCCCACTCAAGACTGCTGTTCTCTTGGCTGTCAACAGCTGCTCTATACACATCCTACACACATCCTCATTAGAAAATCCCATGACTGGGGCTAGAGAGATGGCTCAGCAGTTAAAAGCACTGACCAATGTTCCAGGGGACTCAGGTTCAAATCCTAGCACCCACATGGCAGCTCACAATTGTCTGTAGCTCCAAGATCTGATACCCTCATACAGATGTACATGCAGGCAAAACAACAACATATATAAAATAAAAATTAAATAAAGATGAAAATACCAAAAAGAAGGGGGAGTTTCTTCTAGTGGCCCTAGAATTTTAGTCTCATTGCCAGAACCCCAAGAAGTAGCCTTTGCGGCACTGTACCGTCTCAACTAAGTATATATATATATGTGGTGAAGTCTACAGAGAGTCCCTCATCTGAAGGAGAGACTGATGCCTAAAGTAGACCCAGACGGACTCATCCTCAGTGCTCAGCTCAGGACAGGGATCTGAAGGGGAAGAGTAACATGGGTGTTGGACATGAGCCAGCAGCGGCTTTATCCTGAAAAGAGATCACATTCTTAACAAACTCGGCTCCACAGAGGGATGCTAGAGCATTCAGGAAGAGCATGCAAGAGGACAGGCACGCCTCAGATTTCTTGTACAGGCTAAGGAATCTTGGTCATTTATCCTTGGGGAAACTCCAAGAACAACAGTTAAAGAGAACTTCCAGAAGGGAGAGTTGAGAAGTGCTCTAAGCCTGTGTTTTACACAGTTCTGGATGGACTCCATCTGTATACACTGTGAATCTTAAGGTTTTGTTAAGTTACTTGAAAGCAGCTGTTTGCTTTACTAGCAGAGAAGTCTCTTGAGGGTTGTAAGTGTAGCTCTATGGTAGGGACTTACTGGGTGCCCTCCCATTCCTAAGTGAGTCCCCAGCACCACATTCACAGTGCTAGCGTTTCTCCACATGGGTAACAGGCACCTATTGAGGATGCTGAAGAAGTAGGGTTGTAGACTCTGAAGCTAGCACAGGCTACATAGGAAGACCCTGTGCCAAATAGTAATGATAAAGAATTTAAAATAGAGCTGGGGGGCTGGAGAGTTGGCTCAGCAGTTAAGAGCATTGACTGCTCTTCCAGAGGCCCTGAGTTCAAAGCCCAGCAACAACATGGTGGCTCACAACCATCTGTAATGGGATCTGACACCCTCTTCTGGTGTGTCTGAGGAGATCAACAGTGTACTCACATATATGAAATGAATAAATAAATCTTTAAAAAATGAATAGAATTGGGAAGATAGTTCAGTCAATAAATACCACGAAAGCATAAAGACCTGAGTCCAATTCCCAGCACCCACATAAAAAGCTGAGCAGGACAGCATGTGGTTGGGGTTCCCATACTGAGGAGGCATGTCTTGGAGGCTTGCCAGACACTGAGTCTCAGCCCCAGGTCTCAGTGAAACCCTGTCTGTAAAAATAAGGTGGTGTCATGCAGTGGTGGTGCATGCCTTTAACCCCAGCACTTGGGAGGCAGAGGCAGGCGGATCTCTTGAGTTTGAGGCCAGCCTGATCCACAGAGTGAGTTCCAGGACAGCCAGGGGGCTACACAGAGGAATCCTGTCTCGAAAAACTAAAAAATAAATAAATATATATATATAATATCTAGGTCACTTAGGCTGACCCACACGCATGGGAGGTTAGAGGAGAGAACGGAATATCTTAGTAATCATGACTGACTGGCACATTTTCTAGGGCTAGTAAAACGTACCAGCACAGACATTCAATCTCTGGGAAAACAATTGTGTGCCTGGTCACTGGTGGTAGCCTAACCCTGACAGAGATCTCAGGTCAGCCCTAGAGTAGGAGCACAGGGACAGCTGGACACCTGGGAGCAGTGCAGAGAGGCCCTGGTGTATGAGGCCATGGACTGCCTGGCTTCCCTTTGTAACTTAGGCATTTAGCCTATCCTGTCTCCTTCCAAGAAACACCAACTCCTCTCTCCCTGACCTCTTGGGGACCCCCACTGAACCCCTCAAAATGTCTTAGGTTATATCTTCAACCCCATTTGGTCAAGCAAATCTGGAAGGAGAACCCTTGAACGAGGATTGTTCTAGGTGAGGTAGCAGGAGAGAGAAAATTTCTCCGTTGCTTCGTGTATTTATTGATTTTTATGAAACACAATTCTGCGTGAAATAACTTGTAAAGTGTCCCCTCACACACACACGAAAGGGAAACATGATGACTTATCTTCATATCTCATATGCAGGGGGCCCTTGGTAAACCAAGTCATTAAAGCAGATAGGCCACCGATAGGCTTAGTAAGTAAAAGCACTCACCTCACCGTGAAAGCTGCTGCCTCAAACCATGATGGAAGGAAAGAATGTATTCTCTACAGTTGTCCTCTGACCACCATGACACTCTGTCACACGCATGCCAGCATCCGCACACACATCACACACACGTAGTCTTACTAAAAAGTGAGTGGAGAGCTGGGCATGCAGCTCAGTGGGAGGCGTGCTGAGCCCTCAGGAAGCCTTAGCTTGCACTTCGCACTGTAACCAGGTGTGGTGACACACATCCCAGCAAAGGATAGAAGGAGTGGAATCACCAGACTCCACAGCACTAGCTTGTGAAACCAGCCCTCAGGAGGCTGAAGCAGGAGGAGTATTTGAGGCCAGCATAGGCAACATAGAGTCGCCAAGGCAGAGGGGGACTGGCAGGGATGAGGCCACGCAGGTGGTGAAGAGATGAGAATGTCGCTCTCAGTGAGGGTGTCCAGGAGGAGAGCGGGAAGTGTGTTTGCTCTCAGGGACCTGGAGTTAGTCAGTGCTAAGGACTCAGGTCCCCAGGTGGATCTCACACTATGTTTCTGATGTCTTCCTTCTCAGAGCCACGGTAAAGGCTTACTCTGGGCTAGAAGCCGGTTTCCTCTGAGTCTGTTGACTCGGTCCAAGCTTGTCACCACAGCTCCTGTGTGGTACATCCAAGACAGGTGACAGTGAGTGAGGTGTGGGCAGCATGAGGACTAGGGCCATGACAACCCTGTCCCATTCTCACCGCACCCAG
Seq C2 exon
GTTCGGGAGCAGCGGCAATACTGCATCCTTCGGTACCCTCGCCAGTCAGAACGCACCCACCTTCGGGTCCTTGTCCCAGCAGACCTCAGGCTTTGGGACCCCGAGCAGTGGATTCGCTGGGTTTGGATCGGGCACAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000001855-Nup214:NM_172268:33
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.362 A=NA C2=0.125
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
Other AS DBs: