RnoINT0104367 @ rn6
Intron Retention
Gene
ENSRNOG00000023393 | Nup214
Description
nucleoporin 214 [Source:RGD Symbol;Acc:1304977]
Coordinates
chr3:11065477-11069378:+
Coord C1 exon
chr3:11065477-11065648
Coord A exon
chr3:11065649-11069238
Coord C2 exon
chr3:11069239-11069378
Length
3590 bp
Sequences
Splice sites
5' ss Seq
CGGGTAAGC
5' ss Score
9.14
3' ss Seq
CCCTTTCTTGCTGTACCCAGGTT
3' ss Score
9.34
Exon sequences
Seq C1 exon
GTGGCTTCGGTGCTGCTCCAGTGTTTGGCAGCCCTCCTACTTTTGGGGGATCCCCTGGGTTTGGAGGGGTGCCAGCATTCGGTTCAGCCCCAGCCTTTACAAGCCCTCTGGGCTCGACGGGAGGCAAAGTGTTCGGAGAGGGTACTGCGGCCGCCAGCGCAGGAGGATTCGG
Seq A exon
GTAAGCTGCAGGTGGGACCTGGGGAAACCACAAACCTGTGCCAGCCCAGAGCAGCAGGGCCTGACGTTCCTATATGCTCTAAACCAGGCAGTGACCCAGAGGCCTTGCCTTTAAGTAGACAAAAAAGTTGCTGGAAGATTCCTTTTTCTCTAGGACGAGGCACATTGTAAGCAGGTTCTTAACATCGTAGGTAGATGTCAGCCACAACATTGCTGGCTGTCAGTGTGCAGCATGCAGGACATCCATACCCAGTTCCCTGGACCAGGTTTGCTGCAGCTGGGCCTGTGTCTCAGGTGGTCCTTGTATTAGAAAGTCCTGGGGCTGGGGATTTAGCTCAGTGGTAGAGCGCTTACCTAGGAAGCGCAAGGCCCTGGGTTCGGTCCCCAGCTCCGAAAAAAAGAACCAAAAAAAAAAAAAAAAAAAGAAAGTCCTGAAGGAAGAGTTAGGATTGTTCTCTTGAGATGTCTGTTAGCCTCTAGCAAACAACTCCTGTGTGTCCTGTTCTAGGACACCAACTGGATAACCCTCACTCAAGACTGCTGTTCCCTTGTTGTCAACAGCTGTTCCGTATCCTGCACACATCCGCATTAGGAAAATCCCATGGCGGGGATGGCTCAGCAGTTAAGAGCACTAACCAATCTTCCAGAGGACCCGGGTTCAAATCCCAGCTCACAATTGTCTGAAACTCCAAGATCTGATACCTTCCTATAGATGTACATGCAGTCAAGACAACAGTGTACAAAAAGAAAAATTAACTTGAAAAGGGGGGGGGGAGTTGCTTCTAATAGCCCTAGAACTTTAGTCTGGTTGCCAGAACACCAAGAAATAGCCTTTGCTACACTGTATCTTCTCAACTAAGTATGTCAGCAGAGTCCCTCATTTGAAGAAGATGCTGATGCCTAAAGCAGGCCCAGACAGGCTCTCGCCCTCGGTGCTCAGCTCAGAACAGAGATCTGAGGGTTAAGAGTAACATGGGTGTCGAACTTGAAACAGCAGCGCTTTATCCTGAAAGGAGAGTGTGGTCTTATCAATCTTGGCTCCACAGAGGGGCGCTAGAGCGCTCAGGGAGATCATGCAGGATGACAGGCACTCCTTAGTTCTTGTGGAGGCTAAGGAATCCTGGTCAATTTGCCTTGAGAAACTCCAAGAACAACAGTTTTTGGGTTGTTTGTTTGTTTGTTTGTTTGTTTGTTTTAAAGATTGATTTATTTATTATAAGTACACTGATGCTGTCTTCAGACACAGCAGAAGAGGGCATCAGATCCCATTACAGATGGTTGTGAGCCACCATGTGGTTGCTGGGAATTGAACTCAGGACCTCTGGAAGAGCAGTCAGTGTTCTTAACCACTGAGCCATCTCTCCAGTCCCCAAAGAACAATAGTTAGAGAACTTTCAGAAGAGAGAGTTGAGAACCACTGTAAGCCAGTGTTTCGTACAGTTCTGGATGGACTCCACCTGTGTACACTGGGGGTGTTGAGAGTTTGCTAAGTCACTTGAAAGCAGCTGTTTGCTTCACTGGTAGAGAAGTTTCCTCGGGATTGTGAGCGTAGCTCAGTTGTAGAGACTTACTGGGCACCCTCACAATCCTAAGTGAGTCCCAATACAACCTTCAAAATGCTAGCATTTCCCTGTGGGTAACGCGCACCTATTCAGGGTGCTGAAGGAAGAGGCTGTGGGATGTGAAGCCAGCATAGGCTACATAGGAAGACCTGTGCCAAAACAGTAAAGAATTCAGTAAAACCACAAAGCGTGAAGACCTGCGTCTACTCCCCAGCACCCACATAAGAAACCAAGTAGGGACAGCACGTGGTTGGGGTTCTCAGACTGAGGAGACGTCTCTGGGGCTTGCCAGCACACTGAAACTCAGCCCCAGGTCTCAGTGAAACCCTGCCTCTAAAAATAAGGTGGCTGGCTCCCCGACGCAGGACGCTTGAGGCTGGTCCACACTCACAGGAGTGTCTTAGTAACCGTGACTGGCTGGCACATTGTCTAGGGCTGGGAAACGTACCGACACAGACATTAAATCTCTGGAAAGACAGTTCTGTGCCATCCTAACTCTGATCCTGACAGAGATCTCATGTCACCCCTGAAGGAGGAGCACAGGGATAGCAGGACCACCAGGGAATAGTGCAGGAGAGGACCTGGTGTGTGAAGGGCGGGCACTGGGTTCTCCTTGTAACTTAGGAGTAGGTCCTGTCTCTTTTCCCAAGAAACACCAACTGCTCTCTCCCTGACCTCTAGGAGGCCCCCCCTGAACCCCTCAAGATGTTTTTGGTTATATCTTCAACCCCACTGGTCAACCAAATCTGGAGGGAAAACCCTTGAATGAGGATGGTTCTAGCTGAGGTAGCAGGAGGAAGAAGATGGCATCATTTCTACATTGTTTTCTATGTTTATTGATTGTTATAAAACACACGTCTAAGTGAAATAACATGGAAAGTCTCTCTCTCTCTCACACACACACACACACACACACACACACAAAATGGAAGCATGATGACTGCCTCCATGTACAGAGTCCCTCTACCAAGTAATTAAAAGCAGACAGGCCGGAGCTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGCAAGCTCAAGGCCCTGGGTTCAGTCCCCAGCTCCGAAAAAAAAAGAAAAAAAAAACAAAACAAACAAAAAAGCAGACAGGCCAGCAATAGGCTTCGTAAGTTAAAGCACTCACCATGAATGCTGATCCTCAAATCCATGATAAAAGAAAAGGCTCTTCTCTAAAGTTGTCCTCTGACCTCCACTACACGCTGTATCACTCACATGCCAGCATCCACACACAACACATCACACACACTTGTACAGTCTTAAAAGGTGAGTAGAGCGCTGGGCCTGTAGCTCAGTGAGAGACCCTGGCCGAGCACTCGGGAAGCCTTGGTTCATGTTCCTGCGCTGGATAACCAGGTGTATTGACTCGCAGCCCAGCAAATACAAAATGAGTAGTCACCAGACTGCGTGGTACGAGCTTGTGAAACCAGCCCTCAGGAGGCTGAAGCAGGAGTATTATTTGAGGCCAACCTAAGCAATATAGAGTCCCTGAAGCATCAGCAGCCACAGAGCCAAGGCTGAGGGGGGACTGGGGAGGCAAATGAGGCCGCACAGGTGGTGAAGAGTTGAGAAATGTAACTCAATGGCCTGAGAGTGAGGGTGTCTGGGGGGTAGGAGCAGGAAGCACTGTGTTTGCTTCTCAGTGACCTGGAGTTACTGGCAATGCTAAGAGCTCCTGTCCCTGCTGGGATGGGTCTCACATTATATTTCTTTTTTCTTTTTCTTTTTTTTTTTTTAAAGATTTATTTTATGTATATGAGTACACTGTAGCTGTCTTCAGACAGACATACCAGAAGAGGGCATCGAATCCCATTACAGATGGTTGTGAGCCACCATGTGGTTGCTGGGAATTGAACTCAGGACCTCTGAAGGAGCAGTCGGTACTCTTAACCACCAAGCCATCTCTCCAGCCCTCACACTACATTTCTGATGTCTTCCTTCCCAGAGCCAAGGTAAAGGCTTACTCTGGGCTGGAAGCCACACTAACCTGTCCCTTTCTTGCTGTACCCAG
Seq C2 exon
GTTCGGGAGTAGCAGCAACACTGCATCCTTCGGTACCCTCGCCAGTCAGAACGCACCCACTTTCGGATCCTTGTCCCAGCAGACCTCTGGCTTCGGGACCCCGAGCAGTGGATTCTCTGGGTTTGGATCAGGCACAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000023393:ENSRNOT00000037164:26
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.379 A=NA C2=0.167
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]