MmuINT0107224 @ mm9
Intron Retention
Gene
ENSMUSG00000026950 | Neb
Description
nebulin [Source:MGI Symbol;Acc:MGI:97292]
Coordinates
chr2:52003157-52004373:-
Coord C1 exon
chr2:52004281-52004373
Coord A exon
chr2:52003310-52004280
Coord C2 exon
chr2:52003157-52003309
Length
971 bp
Sequences
Splice sites
5' ss Seq
ATGGTATAC
5' ss Score
2.73
3' ss Seq
CTTTTCCACATGTCTTCCAGTCC
3' ss Score
8.04
Exon sequences
Seq C1 exon
GTCTGCGTGTCTGGCGTACTAACCCTGGTTCAGTTTTTGACTATGATCCGGCAGAAGACAACATTCAATCCCGAAGTCTGCACATGATTAATG
Seq A exon
GTATACCCATCCACTACTGTCTAGTGGACTAGAATCAATGAATGTTCTTTCCCTCCAGGGTTTTCCATCTTCTGAGCTTGCTTGGTGGCTGGTGAGCCAAACTAAACTAAGTATGCTTGCTTTAGGAAAAGATTTGGACAAACTGTTTCACTTCCGGTCTCCTTCAGATCCCATTATCATTTCTATATTCTTCTAATGAGAAAAGTTACCCGTTGTTAGAGAAAAAAAATTACATGGGCAAAGGGAAGAGAATATACACACTCATCAGGACCATTTTGAACTATTTGTGTTAGGGGATATTCATACTGTCTGCTCATGTAGAAAATAAACCAATGGGTCAGACCTTGTTGTACACTCCTTTAATCCCAGTAATCAGGAGGCAAACAGATCTCTTTGAGTTCTATCTTAGCTTATTCTACACATTGAGTTCCAGGCCAGCCAGGGCTACATGGCGCAACTTTTTTAAAAAAAAAAAAGTAAAGTATCATGCTGTGCTGTTCTTTTTAAAGTGAAGAAAGCTGTGCTGTTCTTTAAAGGCTTATACTGTAGTCTGTGGATAGAGACCTGTTCTACCCTGACACAATTTTAAGATTGTGCCCACAAGACCATGAAACATAGGAAAGGAACCTCCATCCATCTGGAAATGAGTGAGGTCTTTCTGGAGAAACCAAAAATGAAGTGTGAATATGACTGCTCTCTCTATTTGTTGAAGTGAGCCAGGAAAGGGTATGGTGGTGGGAAGGCCCATAGTTAGACAGATGACTTGAATGTGATACCTCCTTGAGCCACTTAGGCCACCTTTGTCTATTTAAATTCTCATGCATAAAGAAGAACAGCTACACACTAGAGGAATTATAGGTCAGCCATAGCAAACTGCTTAGAACTATGCTTGACAAAACAAAACAAACAAAAAAAAAACACAAAAGTGCTTCCCTCCCATAGGAATCTTATCTTTTCCACATGTCTTCCAG
Seq C2 exon
TCCAAGCTCAACGCCGGAGCCGGGACCAGTCAAGATCTGCCAGTGCACTGAGTATCAGTGGGGGCGAGGAGAAATCTGAGCACTCCGAAGCTGCGGACCAGCGCCTTTCCACATACAGTGACGGAGGTGCCTTCTTCTCTGCAACTTCAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026950-Neb:NM_010889:154
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.623 A=NA C2=0.676
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCTGCGTGTCTGGCGTACTA
R:
CTGTTGAAGTTGCAGAGAAGAAGG
Band lengths:
246-1217
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: