GgaINT0049828 @ galGal3
Intron Retention
Gene
ENSGALG00000012495 | Q9DEH4_CHICK
Description
NA
Coordinates
chr7:36802857-36803631:-
Coord C1 exon
chr7:36803539-36803631
Coord A exon
chr7:36803007-36803538
Coord C2 exon
chr7:36802857-36803006
Length
532 bp
Sequences
Splice sites
5' ss Seq
CAGGTTGGG
5' ss Score
5.26
3' ss Seq
AACTGCTTTTCTCCTCGCAGTCC
3' ss Score
9.59
Exon sequences
Seq C1 exon
GTCTTCGTGTGTGGCGCACAAATCCCGGCTCAGTCTTTGACTACGACCCTGCAGAGGACAACATTCAGTCCAGGAGCTTACACATGATCTCAG
Seq A exon
GTTGGGTCCGCTCTGTACTGTTCATGCAAATCCAACAGAAAAGCTAACTGCTCGGGGACACTGAAGTACAGTTCCAAGTCTTTCTCTGTGCAGGAATGCAAGTATAGGCTAATGTGCTTATTTTGGACACTACATTAGCAATGTAAGCAATGAAATGCTTATGTAGCAAGGTAATGATTTCCAAAGTTGTACACGGGCACAGTTCTGTGGGAATGAGTGGCAGTGAGAACAAAGGAGAGGAGAAACTGCTCCATAGAGCACAAGAGAAGATTGAGAGAAGAACAAATCTGGATGTTAGAAATAAAAGGAACATAAGAACTGTGCTTTTTTTTCGCCTTTTGAGTAGAACTTCAGTACAGTGGTATTTAAAAGCGCTTCAACTACCACTGATTAACCATAAAAACTGATGGATTCAGTCATACTCGCTTCCATTACCTCAGTAAGGTCCAGTCACCACTTCTGCCCACACACGCAGCCTGGCAGCTCCCTGCTCTGGGTCTCTCACCATGACAAACTGCTTTTCTCCTCGCAG
Seq C2 exon
TCCAAGCGCAGCGCCGCAGCAGGGAGCACTCCCGCTCTGCCAGCGCCCTCAGCATCAGCGGGGGGGATGAGAAATCAGAACCCTCCGAGGGGGTGAATCAGCACCTGTCCTACTACAGCAGCGGAGGCTTCTTTACCACCACTGCCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012495:ENSGALT00000020410:140
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.531 A=NA C2=0.667
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCTTCGTGTGTGGCGCA
R:
TGGCAGTGGTGGTAAAGAAGC
Band lengths:
240-772
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]