RnoINT0099865 @ rn6
Intron Retention
Gene
ENSRNOG00000006783 | Neb
Description
nebulin [Source:RGD Symbol;Acc:1311134]
Coordinates
chr3:37663914-37665123:-
Coord C1 exon
chr3:37665031-37665123
Coord A exon
chr3:37664067-37665030
Coord C2 exon
chr3:37663914-37664066
Length
964 bp
Sequences
Splice sites
5' ss Seq
ATGGTACGC
5' ss Score
8.57
3' ss Seq
CTTTGCCATGTGTCTCCCAGTCC
3' ss Score
8.25
Exon sequences
Seq C1 exon
GCCTGCGTGTCTGGCGGACTAACCCTGGTTCAGTTTTTGATTATGACCCGGCAGAAGATAACATCCAGTCCCGAAGTTTGCACATGGTCAATG
Seq A exon
GTACGCACGCCCACGGCTGTCTAGTTGGCTAGAGCCAATGTTCCTTCCCTCCAGGGTCCTGCATCTTCTGAGCTTGCTCATTGACTAGTGGGCCAAACTGAGCATTGATTGGTTTGAGGAAAGATTTTGACAAACTTTTATTTCATGACTCCTTCAGAGGAGTCTCTATATTCTTCTTCTAACGAAAACGTTAGTCTTTGTTAGAGGAAAAAAAATGCACGGGCAAAGGGAACATACATGTTCATCCGGAACGTTATGAACTATTTGTGTTAGGGAATATTCATACTGTCTGCTCATGTAGAAAATAAACTGACAGGCCAGGCGTTATTGTATACTCCTTCAATCCCAGTATTCAGGAGGCAGGGGCAAACAGATCTCTTTGACTCCAGCTTGTTCTACACATTGAGTTCCATGCCAGCCAAAGCTATATGGTGAGACTTCTTTTTAAAAACAGTAAAGTTTCATGCCGTGCTGTTCTTTATAAAGAAAGCTCTGCTGGTCTTTAAACACTTACACTGTAGTCTGTGGCTAGAGACCATCAGTAACCTCTTGTTCTACCCTGACATGTATACAATTTAAGGTTGTGCCTATAAGACCATGGAACATAGGAAAGGAACCTTCATCCATCTGGAAATGAGGGAGGCCTTTCTGGAGAAACCAAAAATGAAGTATGAATATGACTGCTCTCTCTGTTCACTGAAGTGAGCCAGGAAAGGGGTGTGGTGGCAGAAGGCCCATAGTTAAAGACAGATAACTTGAATCTGATACCTCCTCGAGCCACTTAGGCCAGCTTTACCCATTTAAATTCTCTCCCATAAGAACAACAACCGTACACTAGAGGAACTGTACGTCAGCCATAGGAAGCTACTTAGAACTATGCTTGATAAAACGAAACAAAATGAAACAAAACCGCAATGGAGGAATCACTCCCATAGAAATCTTATCTTTGCCATGTGTCTCCCAG
Seq C2 exon
TCCAAGCTCAACGCCGGAGCCGGGACCAGTCCAGATCTGCCAGTGCACTGAGCATCAGTGGGGGTGAGGAGAAGTCTGAGCACTCGGAGGCCGCAGACCAGCGCCTTTCCACATACAGTGACGGAGGTGCCTTCTTCTCTGCAACCTCAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000006783:ENSRNOT00000059461:111
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.656 A=NA C2=0.673
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCGTGTCTGGCGGACTAAC
R:
TGAGGTTGCAGAGAAGAAGGC
Band lengths:
238-1202
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]