MmuINT0001915 @ mm9
Intron Retention
Gene
ENSMUSG00000026955 | 2010317E24Rik
Description
RIKEN cDNA 2010317E24 gene [Source:MGI Symbol;Acc:MGI:1919330]
Coordinates
chr2:25227841-25229037:+
Coord C1 exon
chr2:25227841-25228518
Coord A exon
chr2:25228519-25228935
Coord C2 exon
chr2:25228936-25229037
Length
417 bp
Sequences
Splice sites
5' ss Seq
TGGGTGAGT
5' ss Score
8.73
3' ss Seq
TGCCCTAACCTGTCCTGAAGGCT
3' ss Score
5.29
Exon sequences
Seq C1 exon
AGCTCTTCATTCAAAAACAGCAGCTATTGTCGCCGTGGGGAGCGCGCGCCGCCTTGCAGGTTCTGCCATCTGGTCTTGCGGGGACCGACGCGGGTGGAAGCTGGGCGCCCATGGCCGTGGCAGCGATGGCCGAGCGTGGCCGCCTATCGCACGCTGCGCCCGCTCCTAGTACAGAGGGGCTACCGCGAGCCTTTCTCCAGAGCCTGCGCACCCTCTTCGACATCCTGGACGACCGGCAACGCGGCTACGTGCACCTGCGGGAGATCGAGTCCCGCTGGCAAGGTGCAGACGCACGCGAGCTGCCGTGCGGCGTGCTCGAGGGCCTGCGCCAGGTGGCCCCGGCCAATGGCTACCTGACCTTCGAGCGTTTCGTAGCGGGCTTGCGCACCTCGCTGCTGAAAGCCGACGGCGGCCAGCGGGATCAGGCACGCGTCGCGGCCCGGCCTGGGGACCAGTCGTCCCTGCAGCAGCGCCTGATGTTCGCACCGGCCGATGAGCCGCGGACTGTCCTGGAGAGAAAGCCTCTGCCTCTGAGTGCGTGCCCTGCTTCTGGTGGCCCCAGTGGCACCTCCCGGAACCCTGAGCTGTTATGTGTCCCGGTGGAGGCGGCGTCCTGCCCCACAGAGACCGAGCGGCCCCTGAGCAAGGCGCTGGAGCAAATCCCCAGCGCGGATTTGG
Seq A exon
GTGAGTTTGGGTCCCTAGTCACACCTCGTAATTCCAGGGACTTGTGCTAGAAACTGGAGACCCACAGGGTCTTGTCAGAGGGGTGGAGATGGGGACGACTGTGAGCAGCCTCTTAAGGAAGGTTGGGGCCACCTGGGTGGAAAGGGGCTTTGGCCTGTGCCTAAGTGCTGAGGTAAGGGCAGAGGCCCGATACCAGGGCCAAGGGCTGATAAGTGACTGATAACTCAGGAGACGCCCAGTCTGTCTCAAACCTGAGCTAGGCATTGGAGCGTCTGTGGCCGTGAGAGAAGGCATCAGCCTGCTGTACCTGCTCTAGACCTGGGGACATCTGGGTCTTCATCTTCATTTCTGCGTGGCTGCTTGTGAACGTTTCTTCTTAAAAGTGCTCATGCTCTCATGCCCTAACCTGTCCTGAAG
Seq C2 exon
GCTCTTCTCAGTGTGACACCCTGCAGAGACAACCCGGCCTGCTTCTCCACCCAGGAGGCAGAGGAGGCAGCACAGGAGCACCTAGCACAAGTGCTGAAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026955-2010317E24Rik:NM_001081085:1
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.443 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCAATGGCTACCTGACCTTC
R:
GGGTGTCACACTGAGAAGAGC
Band lengths:
358-775
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: