MmuEX0000756 @ mm9
Exon Skipping
Gene
ENSMUSG00000026955 | 2010317E24Rik
Description
RIKEN cDNA 2010317E24 gene [Source:MGI Symbol;Acc:MGI:1919330]
Coordinates
chr2:25227841-25230584:+
Coord C1 exon
chr2:25227841-25228518
Coord A exon
chr2:25228936-25229037
Coord C2 exon
chr2:25230472-25230584
Length
102 bp
Sequences
Splice sites
3' ss Seq
TGCCCTAACCTGTCCTGAAGGCT
3' ss Score
5.29
5' ss Seq
AAGGTTGGG
5' ss Score
4.94
Exon sequences
Seq C1 exon
GCTACCGCGAGCCTTTCTCCAGAGCCTGCGCACCCTCTTCGACATCCTGGACGACCGGCAACGCGGCTACGTGCACCTGCGGGAGATCGAGTCCCGCTGGCAAGGTGCAGACGCACGCGAGCTGCCGTGCGGCGTGCTCGAGGGCCTGCGCCAGGTGGCCCCGGCCAATGGCTACCTGACCTTCGAGCGTTTCGTAGCGGGCTTGCGCACCTCGCTGCTGAAAGCCGACGGCGGCCAGCGGGATCAGGCACGCGTCGCGGCCCGGCCTGGGGACCAGTCGTCCCTGCAGCAGCGCCTGATGTTCGCACCGGCCGATGAGCCGCGGACTGTCCTGGAGAGAAAGCCTCTGCCTCTGAGTGCGTGCCCTGCTTCTGGTGGCCCCAGTGGCACCTCCCGGAACCCTGAGCTGTTATGTGTCCCGGTGGAGGCGGCGTCCTGCCCCACAGAGACCGAGCGGCCCCTGAGCAAGGCGCTGGAGCAAATCCCCAGCGCGGATTTGG
Seq A exon
GCTCTTCTCAGTGTGACACCCTGCAGAGACAACCCGGCCTGCTTCTCCACCCAGGAGGCAGAGGAGGCAGCACAGGAGCACCTAGCACAAGTGCTGAAGAAG
Seq C2 exon
GTGCAGCAGCCTGTAAGACCCTGGGCAAGGGCACAGGTGAAGCCCGGCAGGCTCCACGGGCCCGAGGCGAGCGTCGAAGGCATACCATCACCAATGGTGTGGACTGCAGCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026955_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
Show structural model
Features
Disorder rate (Iupred):
C1=0.443 A=1.000 C2=0.781
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF114143=Suppressor_APC=PU(4.8=10.5)
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAAAGCCTCTGCCTCTGAGT
R:
GGTGATGGTATGCCTTCGACG
Band lengths:
255-357
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types