HsaINT0025354 @ hg38
Intron Retention
Gene
ENSG00000186193 | SAPCD2
Description
suppressor APC domain containing 2 [Source:HGNC Symbol;Acc:HGNC:28055]
Coordinates
chr9:137066262-137070588:-
Coord C1 exon
chr9:137069890-137070588
Coord A exon
chr9:137066375-137069889
Coord C2 exon
chr9:137066262-137066374
Length
3515 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
3' ss Seq
CCCATGCCTCTCCATAACAGGTG
3' ss Score
9.24
Exon sequences
Seq C1 exon
GCCGCGAGGAGGGCCCCATTCAAAAGTAGTCGCTATTGTCGCCGTGGGCTGAGCTCGCCGGGCCGGCCCCTCCGTGGGGCCGCGCTGGGACGCACGCGGGTGGACGAGGGGACCGATCCCGGGCGCCCATGGCCGGGGCCGCCATGGCCGAGCGGGGCCGCGTGCCTCCCCCCGCACCCGCGCCCAGCACGGAGGGGCTGCCGCGCGCCTTCCTGCAGAGCCTGCGCACCCTGTTCGACATCCTGGACGACCGGCGGCGCGGCTGCGTGCACCTGCGCGAGATCGAGTCCCGCTGGCAGGGCACCGACGCGCGGGAGCTGCCCCGCGGGGTGCTGGAGGGCTTGCGCCAGGTGGCCCCGGCCAGCGGCTACCTGACCTTCGAGCGCTTCGTGGCCGGCCTGCGCACCTCCCTGCTGAGCGCCGACGGCGGCCCCCGGGACCCCACGCGCGCCCCGGCCCGGCCCGGGGATCAGCCGCCGCCGCCGCCGCAGCGCCTGGTGTTCGCTCCGGCCGACGAGCCGCGGACGGTCCTGGAGAGGAAGCCCCTGCCCCTGGGCGTGCGCGCCCCTCTGGCCGGTCCCAGCGCCGCCGCCCGCAGCCCGGAGCAGCTGTGCGCCCCGGCTGAGGCGGCGCCCTGCCCCGCGGAGCCCGAGCGGTCCCAGAGCGCGGCGCTGGAACCGAGCTCCAGCGCGGACGCAG
Seq A exon
GTGAGTTCCGGACGGCCCCCGGGCACCCTCGTAGCTCTCCCGGGCCCGGGCCAGAAACCGCAGTCCCACAGCTGCTGCCCGTGCATTTCCCACAAGGGACGGGACCGGGGAGCGGCTCTTCGTGGACTCCGGATCCTGGAGGGCGCCTCGGCGGGTCTGGAGGGAAAGGGCTTCATGCTTGTCGCGGTGAGCCCAGGGGCTTGCTTAGGGAGGCAAGCCAGACCCTCTCCTGCCACAGCATAAGGCCACCAGGGCCGGGGGGTGGCAGGTGACTCAGAAAACCCACCGGGAGCCCAACCTGTACCAAGCCTGAGCTTGGGCTCTCCATCTCCAATACCCTTTCCGCACCTGGGGACACCTGGGCCCTCAGCCTCCTGTCTGTGGCTGCTCAGGCAGAAGTGCTTCCTTCTCAAAGAAAGGGTCCCCCTTCTCAGTGTGACAGCTTAGCCAGGGGGGCTGGGCCCACTGACCCCACTGAGGCCTAGGCAGGCGGGGGCTGCTGCTGGTGGCCCAAGAGGACCTGGCCCTGTTGCCAAGATGGGCAGGGGCGTGGGTGGATCTCCTGCACCCCAGTGGGGCTGTACTATGGCAGATGCCATGGAGGGACATAGGCCGTAGTCCCTGGGGATGGCTGGCACACTCCTCTCCTGCCTTCCGGTCCAGTTGGCAGTGATGGGAGATTGCTGAATGGTCCCCTGTCTCCCCCAACCCAGTGCCTGCCTTGGGAACAGGACCTGTATTATGGCTGGGGTTGGGGGGCCAAGCTCCCAGAGGGGCCCCAGGCCCCACAGCCCATTCGGCCTGTGCACCCGTTCTGCCAGGGGAGGCCTGCCCACCGGTGGCTCCTGCCGGTCCCTGTGCTGCCTGCTGCTCTGCCACCCTCCCTGTACTGCTCCCCCACCTCAGCCATATTCTCCAGCCCTACAGCTGGTGTTTGGAGCCACGGCGGCCCTGGCCTCCCTGGTGATCTGATCCAGCAGCCACACCAGGCTGGGGGACCCCTAGTTCTATGGTGAGGGAACCTTCAGAGGGTATCTGGCTCCAAATGCAGGGTCAGCGTCATCCATGTGGCCATGCAGTTTGAAATCAGCCATGGGATTGCACGCTGTGGCCGGGCCTGGGGTTTGGAGGCCTAAGCCTGTGGTCCACCCCTGCTCTGCTCTGATGCCCCATGCGGCACTGGCTCACGTACCACATCTCCCTGAAGGCCACATGGCTAGGGCTGTAGCTGTCACCCTCTCACAGGCAAACGGAGGGCCAGACAAATGGCGTGACATATTTGATTGACACAGCTGGCTTTTGGGGTGTCAAATCTGGAGCTCTGAGGTCACCCCAACTCCCAGAAAGCCTGCCAACACACACAGCCTTCCAAGCCCCCAGCCCAGATGTTCAGGGCCTCTTTCCTTGTTCCCACCTGGGACTGCGTGTTTGCTCCAGGCTGGCTGTGGCCCTGGAGGTGTGGCCTGCTGGCTCAGGGCCCTGGAGGGGCAGAGCCACCACCCCCACCTAGAGGCCATCTAGCTCATCACCCAGCACGCTGCTATCTGGGGACCCAGGAGCTGCTCTATGGACTCAACTGTACAGACCGGGCCCAGGTGTCCTGGGACTTCCTCTATGGCCTCCCTCTGTCTGTACCCTCTCTGCTCCCACCTCCTGAAGGGCTGTGTGCTCTTCCACTGTCTTGCCCCAGAGCTGCCAGCCGCTCAGCACCGCAGGCTGGAGTGCGAATTCGGGCCTGCCTGGAGCCAGGCTCTCTGCCGTGCCTACCTGGGCCCAATTCTTGCATCACTCCCTGACTCCTGTGGCCAGGTGCCAGGGGCATGGCCTCTAAGGATGTGCCTGGTGCTGGGGCTACAGCTGGAGGCCGAAGGAGGATGCCTTCCTCCACACCTGTACCCACTTCTGTAGCCTGGGGAGGTGCACCTACTCCCTCACCAGGAAGCTGGGCCGGAGTGGCACCAACGCGATACTCTTGGCTGCCCCCAGGGGGAGCCCTCAAACAAACTTCAGAGCAGGGGTCTGTGAGCACCAGGACGTGCCTGACTTGTCAGTTGGGTGCACCGCCTGGCGTATCACACACGCGGGACTTTTTTTTTTTTTTTTTTTTTTTTTTTTGAGATGGAGTCTTGCTCTGTCGCCCAGGCTGGAGTGCAGTGGCGCGAATCTCAGCTCACTGCAACCTCCGCCTCCTGGGTTCAAGCGATCCTCCTGCTTCAGCCTCCCGAGTAGCTGGGATTACAGGTGCATGCCACCACGCCCTGCTAATTTTTGTATTTTTAGTAGAGACAGGGTTTCACCATGTTGGCTAGGCTGGTCTTGAACTCCTGACCTCAACTGATCCCCCCCCGCCCCAGCTTCCCAAAGTGCTGGGATTACAGGTGTGAGCCACCGTGCCCGGCAAGGGATCTTTTTTTTTTTTGAGACAAAGTTTTGCTGTGTTGCCCAGCCTGGAGTGCAGTGGCGCAATCTGGGCTCAGTGGAACCTCTGCCTCCCAGGCTCAAGCAATCCTCCTGCCTCAGGCTCCTGAGTAGCCGGGACCACAGGTGCATGCCACTGCACCAGGCTAATTTTTGTGTTTCTAATAGAAATGGGGTATTGCCGGCCGGGCACAGTGGCTCACGCCTGTAATTCCAGCACTTTGGGAGGCTGAGGTGGGTGGATCACCTGAGGTCAGGAGTTCAGGACCAGCCTGGTCAACATGGTGAAACCTCATCTCTACTAAAAAATACAAAAAGTAGCTGGGCATGGTAGTGGGTGTCTGTAATCCCAGCTACTCGGGAGGCTGAGACCGGAGAATCACTTGAACCTGGGAGGCGGAGGTTGCAGTGAGCCAAGATCATACCATTGCACTCCAGCCTGGGCAACAGGAACAAAACAACGTCTCAAGAAAAAAAGGAAGAAATGGGGTTTTGCCATGTTGCCCAGGCTGGTCTCAAACTCCTGAGCTCAAGCGATCCACCCGCCTTGGTCCCCAAAAGTGCTGGGATTACAGGCGTGAGCCACTGTGCCCGGCCATGCGGGACTAACTTTCTATCAGAGTCACCATCCTGGGAAAAGTTAGGTTTCCGTCATTCACACCCACATCTCCTGCTGCCTTGCAGGACCCCGTGCAGATGGGAGAGGCGTAGTCAGGACCAGAACCCCCCCGCCCACTCCTCCCTTACCCAGCTGCCTTGGAGACCCAGGGTGTGCCTGCCATGTTCTGGGCACTGGGTGTGCAGAAGAGAGCTGGATAAGGCCTCTGGCCCCAGAGAGCTCACGGACCGATGAGGGGGCAGGGTGTGTGTTTGAGCAAACATGCGGGCTTGGCGGCACAGCCCTCCCCAAGCCAGTGTGAGGAGCTGGAAAGGGGAGAGGGACCAAACTCCAGCCTGGCACAGAGGCTACACGTGGGCCATGCCAGGCTGGTGCCCGAGACCTCGAGGGTGGGCTGAGATGTGGAGGCCGCTGCACCTCAGCAGAGCCTGGCCAGGCAGGTCTGGAGGTGAGCCAGGCCCATGCCTCTCCATAACAG
Seq C2 exon
GTGCAGTGGCGTGCAGGGCCCTGGAGGCGGACTCAGGGGATGCCCGGCGGGCTCCCCGTGCCCGAGGGGAACGTCGGAGGCACACCATCGCCAGCGGCGTGGACTGCGGCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000186193:ENST00000409687:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.725 A=NA C2=0.632
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF114143=Suppressor_APC=PU(4.8=10.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development