BtaINT0128572 @ bosTau6
Intron Retention
Gene
ENSBTAG00000047807 | SAPCD2
Description
suppressor APC domain containing 2 [Source:HGNC Symbol;Acc:HGNC:28055]
Coordinates
chr11:106168323-106171403:+
Coord C1 exon
chr11:106168323-106168686
Coord A exon
chr11:106168687-106171290
Coord C2 exon
chr11:106171291-106171403
Length
2604 bp
Sequences
Splice sites
5' ss Seq
CGGGTGAGT
5' ss Score
9.89
3' ss Seq
CTCTCACTTCTCTGCTACAGGAG
3' ss Score
9.17
Exon sequences
Seq C1 exon
CAGGTGGCCCCAGCCAGCGGCTACTTAACCTTCGAGCGCTTCGTGGCCGGCCTGCGCACCGCGCTGCCGAGCTCCGACGGCGGCACGCGGGGCCCCGCACGCGACCCGGCCAGGGAAGGCTGCTCGGCGCGGCCCGGGGGCCAGCCGCCGCCCTCGCGCCTGGTGTTCGCGCCGGCCGACGAGCCGCGGACCGTCCTGGAGAGGAAGCCCCTGCCCCTGGGCGCGCGCCCCGCGCCGGCTGCCCCCGGCGTCGCGAGTCGGAACCTGGAGAAGCCGTGCGGCCCGGCGGAGGCGGCGGCCGGTCCGGCGGAGCCCGAGCTGCTCCGGGGCGCGGCGCTGGAGCGGAGCCCGAGCAAGGACACGG
Seq A exon
GTGAGTGCGGGGCGGCCCCTGGGCCCGCCCGGAGCTCCCCGCTGGCGTCACCCCGCTGCCTGCAGGGAAAAGAAGTTCCTCCGCGCTTCGGGTGCTCGGGGACCCTGCCAAGGAGCTGCTTGGAGCCCCCGCAGACCCCATCAGGAGCCCACTCCGAGCTAAACCCGAGCGGGGAGCCGTTTTGGTCTGAGGGCTCTCCACCTCAGTACTTGCCCACACCTGGGGACACCCGGGCCCTTGGGTTCATCTGGTGACTCAGGCAGAGGCAATTCTCACTGGTGCCAAGGGAGGGTCCCCAGACTGTGAAGGGCCTTTGCTGCCTCCTTGGGTCCTTCTCGGTCTAGCAGCTCGGCGGAGAGACCTGGGCGGACCGCCCCCTTGAGGGCAGGGTGGAGCTGCCAGGCGTGGTGCAGGAGAACCTGGCCCCAGAAAGGGCAGAGAGTGGAGGGTCTCCAGCCGAATCTTCCAGGCCTGGAGCCTTGGCGCCTCTGACACCTGGGCGGGATCAACCACAGCCCCTGGGGATGGCCCAGCTTCCGGTCCAGTTGGCAGGGACAGGGCATGACTGAATGGTCTCCTGTTTATCCCCCAGAGAGCCTGCCCTGGGAACAAGACTGGCATTATCCGGGGAGGGGGCGGGGCCCCCTCGGGCCATTCAGCCTGTGCAGGTGCAGGCCCTCCGCTGGGCAGCTGTGGCCGTTTCTATGCTGCCCACCGCTCTGCCAGCCTTGCTGGACCCCCTGCCCAGGCTCAGACATATTCCCCAACTCCATGACTGCCAGCTGGAGCTGCGGTGGCCCCCGCCTCCCTGTCGAGCTCATCAGACCCTCAGCTGGGGGCTCCTGCATCCAGGCTCCTCGCTGCCCGGCCTCCACGTCCCCCCCGGGTGTGAAGGGGAAGCGGGCTTCTGGGCGTGCAGCCCTAGTGCGGGCCCGGTGCTGTCCGCCTGATTGCATGCGGTTGGGAATTGGCCGTGGGACTGGGGTTTGCAGCCTCAGGCCCGTCATCGCACCAGGTCCGTCACTGCGGTCCTCTGAGGTCCAGTTCCGGCGTCCACTGTCACCTTTTACCAGCGGAGGCCCAGACGGGGCTCATTACATACTGTTTGGGTGCAAAACTTGGAGGTCTGAGAACCCTTAGCACCCCAGGAAGAGGAAGGTGCCCCACGTTCACAGCCCCCCAAGCCCTCCCCGCCGTCCAGGCCCTCCTTCCTGTTTCCTGTTGGGGTTCAGCATGCACCCCAGGCTGGCCTGAGCCCCGTAGGTACAGGCTGCTAGATCCCACTCGGATGGGGTGGCGTGGGGTCAGGGATGCCTCTGCCTGCTGGGCCTCCAGCCTGCTGTCATCTGGGGGCCCTGAGCCACCCTGCAAAGCTCTGGTGCAGACCAGCCCAGGTGTTCCAGGGTGCCCCAGCACCCCTCTGCTGTGCCTTCTCTGCCTGGAGCGCGGCTCGGCAGGTTGGAACGTGAACTCAGCCTGCCTGGAGCCGGTCTGCCAGGCTGGCTGGTTGGAGCTGGTCTACTACAGCTAGCCGGTGGCCCACATGGCCACCTGGTCCCAGCCCTCTGGAAGTGTCCTTGTCAGACATACCTGTGCCTGCTTCTTGCATCACCTGCCCACTGCCATGCCAGGCAGGGCATAGGGCTTGGGAGCCCAGGGAGGGCGCCCTCTTCACCTGCACCCACTCCCCCCTCATGGGCAGCCCTGCTTGCCTTCCCTGTCCTCCAGGGAAGCTGGTGGCCCTCCAGGAGGCCCGCCCAGGGAAGCACCTGGCTTTCTGGCCCCACGCCAACTCTGCGGGTGGCCATGTATGCGTAGGAGTTACTGCTGGGGCTCCACTGGTGCAGGTATGCAGGGATCGTGCTGCAGTCTCCTTCCTGGGAGAACGCTGGGCTCTGCTACCTAAGCCCTACATTCCTCCTGCTTGAACTCCGTGTGTGCTAAGTCGGTTCAGGCATGTCTGACTCTTTGCAGCCCCATGGACTGTAGCCCGCAGGGCTCCTCTGTCCCTGGAGTTCTCCAGGCAAGAATACTGGAATGGGTTGCCATGGCCTCCTCCAGGGGATCTTCCCGACCCAGGAATTGAACTGAGTCTTTTTGTGTCTCCTGCATTGGCTGGCGAGTTCTTTACCACCAGCACCACCTGGGAAGCCCCAGTCACCCTTAAAGGGCCAGGCGGACAAGGAGAGAGGAGTGGAGGCCAGAGGTCACCTCGCTGGCTCCGAGTCCAGCAGCCTTTGAGCCCTTGAGGTATGGGCCCTGGGTGTGCAGAGCTGAATGAGATGGAGCCCCCTGCCCTCCAGGAGCTTGCACAGGCGGTGCGAGTGCAGACCTGTGCGTCAGTGGCCGCACGGCTGTCTGCAAGGCAGGTGTGAGGGCAGCTTGTGAGGGGTGAGAGAGGACCAGGCTCCAGCCAGGCCCCAGCAGGGTGTGGCCCAGGGAGGCTCTGGATTGCTGAGGATCCCAGAGGCATGCAGGCCTGGGCACCTGGCTTTGTGCAGCCGGGATTGGTTGGGGGGTGGGTCTGGGATGGATCTTTGGGGGTTTGGGGGAGTCAAGCTTGCCTCACGGGAAGTGAGCCAGGCTCTCACTTCTCTGCTACAG
Seq C2 exon
GAGCAGTGACCTGCAGGGCCCAGGAACTCGGCACGGGGGCCGCCCACTGGGGGCCCCGTGCCCGAGGGGAACGGCGGAGGCACACCATCACCAACGGCGTGGACTGCGCCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000047807:ENSBTAT00000063271:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.836 A=NA C2=0.868
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF114143=Suppressor_APC=PU(4.8=10.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development