MmuINT0001916 @ mm9
Intron Retention
Gene
ENSMUSG00000026955 | 2010317E24Rik
Description
RIKEN cDNA 2010317E24 gene [Source:MGI Symbol;Acc:MGI:1919330]
Coordinates
chr2:25228936-25230584:+
Coord C1 exon
chr2:25228936-25229037
Coord A exon
chr2:25229038-25230471
Coord C2 exon
chr2:25230472-25230584
Length
1434 bp
Sequences
Splice sites
5' ss Seq
AAGGTTGGG
5' ss Score
4.94
3' ss Seq
TCCCCGACTGTCTGTTACAGGTG
3' ss Score
11.08
Exon sequences
Seq C1 exon
GCTCTTCTCAGTGTGACACCCTGCAGAGACAACCCGGCCTGCTTCTCCACCCAGGAGGCAGAGGAGGCAGCACAGGAGCACCTAGCACAAGTGCTGAAGAAG
Seq A exon
GTTGGGTGTATGTATGATGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTCCCACAGCACCTGCTGTGCTGTGCTGCTGCAGATACACTGCCAGACACAGACCAAAGTCTCTGGGGAATCCAGCAGGCTTCTCTCCCTCCTTCCGGTCTAGTTGGCTGGGACAGGAGACTGTTGAATAGCCCCCTGTCTGCCTTGAGAACAGGACCTGCATTATGCCTGAGCCTGGAGGCAGGTTCTCAGGAATCTAAGCCCCTCTTCCAACCCTGTTCCCCATTTATCCTGTGCACTGCCCTGTCAGGGCTGCCCACTCATGGCAGCTGCCAGTTCATTTTAGTACACAGAGGGACAGAGACAGAGAGAGACTGGGCTCTACTTGCGGTTCAAGCCTTGACTCCCTGTTCTTGTGGAAGGGGAAGCTTCTAGGCATAGCTGGTTATCTTGGTGGCTGTGAGTGTGAAGTCAGCCCTGGCATGGGACTGTATATAATGGACAGGGTCCGGGTTTGTCTGTGGTACAGATCTGTTTTACCTTGTGTGGCCCTGAGTCAGTTACCCCTCTGAAAGCCATGTGCTCAGGGCCCATGACTGGGCAATATTTAGCCATTGCTCTGTAAACCTAAAGCCAGGCTCTAGCTCTAACTTTTTTATAGGTCAGCCAAGGTCCAGATAAGGATGTTGGTATACTTGCTGAACCACTTTAGCTCCCTATGAGCACATATGACCTCAAATGCCCAGTTCTACGGTATATGCCTCTTTTCTGTGCAAACGTTCCAGGTCCTTCCTAGAACTCAGTGCCAGTACCTGCTCTGGCCCCACCCTCTGGAGGCAGCCTCCTTTGTAGCTCTCATTGCCTCACCCTGAACCTGCAGACCACTCAGCACAGCAGGATGGGACAGGAACTTTGGGGCCTGCTTGGAGCTAGAGTCTCTGTCTTGCACATCTGAGCCAAATATTGTATCTCTGTCACTCACTCGGATGGCTTAGCCTCGGGGGTGACCCTGATGCCACAGATAGGGTTGGAGAGCCCAAGGGAAGTTCAAAAGCTGTGGGTCACCACACCAGGGCCTATCCATTTCGTCTCTTGCCCTTCCCTCTTTGATACTCTTGATATATGTATCTGATATGTTTTGTCAGGCACTGGGTGACTCCCTGCCCCTGCTTCCTGCCTCCCCCACCCCCACCCCCAACCTCTCAGGGCAGGCAAGAGGATTCCAAGTCCTAACTAGGCACAAAGTCAACAGAGAAAGCAAAAGCACACTCAGGAATCAGTACTGACTGAGGTTCCCTGCACAGGCCTGGTCCCTGGGGTTTGTACTGTCGCAGTTAGCTGGAGGATTCTGGAAGGGCTGGGGAGCCAGGATGAGATTATGAGGCCATTAGGCTTGCCCAGAGTTAAGCTATGTCCCCGACTGTCTGTTACAG
Seq C2 exon
GTGCAGCAGCCTGTAAGACCCTGGGCAAGGGCACAGGTGAAGCCCGGCAGGCTCCACGGGCCCGAGGCGAGCGTCGAAGGCATACCATCACCAATGGTGTGGACTGCAGCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026955-2010317E24Rik:NM_001081085:2
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.781
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF114143=Suppressor_APC=PU(4.8=10.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTCTTCTCAGTGTGACACCC
R:
AGGCTGCAGTCCACACCATT
Band lengths:
214-1648
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: