MmuINT0001915 @ mm10
Intron Retention
Gene
ENSMUSG00000026955 | Sapcd2
Description
suppressor APC domain containing 2 [Source:MGI Symbol;Acc:MGI:1919330]
Coordinates
chr2:25372330-25375064:+
Coord C1 exon
chr2:25372330-25372998
Coord A exon
chr2:25372999-25374951
Coord C2 exon
chr2:25374952-25375064
Length
1953 bp
Sequences
Splice sites
5' ss Seq
TGGGTGAGT
5' ss Score
8.73
3' ss Seq
TCCCCGACTGTCTGTTACAGGTG
3' ss Score
11.08
Exon sequences
Seq C1 exon
TTCAAAAACAGCAGCTATTGTCGCCGTGGGGAGCGCGCGCCGCCTTGCAGGTTCTGCCATCTGGTCTTGCGGGGACCGACGCGGGTGGAAGCTGGGCGCCCATGGCCGTGGCAGCGATGGCCGAGCGTGGCCGCCTATCGCACGCTGCGCCCGCTCCTAGTACAGAGGGGCTACCGCGAGCCTTTCTCCAGAGCCTGCGCACCCTCTTCGACATCCTGGACGACCGGCAACGCGGCTACGTGCACCTGCGGGAGATCGAGTCCCGCTGGCAAGGTGCAGACGCACGCGAGCTGCCGTGCGGCGTGCTCGAGGGCCTGCGCCAGGTGGCCCCGGCCAATGGCTACCTGACCTTCGAGCGTTTCGTAGCGGGCTTGCGCACCTCGCTGCTGAAAGCCGACGGCGGCCAGCGGGATCAGGCACGCGTCGCGGCCCGGCCTGGGGACCAGTCGTCCCTGCAGCAGCGCCTGATGTTCGCACCGGCCGATGAGCCGCGGACTGTCCTGGAGAGAAAGCCTCTGCCTCTGAGTGCGTGCCCTGCTTCTGGTGGCCCCAGTGGCACCTCCCGGAACCCTGAGCTGTTATGTGTCCCGGTGGAGGCGGCGTCCTGCCCCACAGAGACCGAGCGGCCCCTGAGCAAGGCGCTGGAGCAAATCCCCAGCGCGGATTTGG
Seq A exon
GTGAGTTTGGGTCCCTAGTCACACCTCGTAATTCCAGGGACTTGTGCTAGAAACTGGAGACCCACAGGGTCTTGTCAGAGGGGTGGAGATGGGGACGACTGTGAGCAGCCTCTTAAGGAAGGTTGGGGCCACCTGGGTGGAAAGGGGCTTTGGCCTGTGCCTAAGTGCTGAGGTAAGGGCAGAGGCCCGATACCAGGGCCAAGGGCTGATAAGTGACTGATAACTCAGGAGACGCCCAGTCTGTCTCAAACCTGAGCTAGGCATTGGAGCGTCTGTGGCCGTGAGAGAAGGCATCAGCCTGCTGTACCTGCTCTAGACCTGGGGACATCTGGGTCTTCATCTTCATTTCTGCGTGGCTGCTTGTGAACGTTTCTTCTTAAAAGTGCTCATGCTCTCATGCCCTAACCTGTCCTGAAGGCTCTTCTCAGTGTGACACCCTGCAGAGACAACCCGGCCTGCTTCTCCACCCAGGAGGCAGAGGAGGCAGCACAGGAGCACCTAGCACAAGTGCTGAAGAAGGTTGGGTGTATGTATGATGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTCCCACAGCACCTGCTGTGCTGTGCTGCTGCAGATACACTGCCAGACACAGACCAAAGTCTCTGGGGAATCCAGCAGGCTTCTCTCCCTCCTTCCGGTCTAGTTGGCTGGGACAGGAGACTGTTGAATAGCCCCCTGTCTGCCTTGAGAACAGGACCTGCATTATGCCTGAGCCTGGAGGCAGGTTCTCAGGAATCTAAGCCCCTCTTCCAACCCTGTTCCCCATTTATCCTGTGCACTGCCCTGTCAGGGCTGCCCACTCATGGCAGCTGCCAGTTCATTTTAGTACACAGAGGGACAGAGACAGAGAGAGACTGGGCTCTACTTGCGGTTCAAGCCTTGACTCCCTGTTCTTGTGGAAGGGGAAGCTTCTAGGCATAGCTGGTTATCTTGGTGGCTGTGAGTGTGAAGTCAGCCCTGGCATGGGACTGTATATAATGGACAGGGTCCGGGTTTGTCTGTGGTACAGATCTGTTTTACCTTGTGTGGCCCTGAGTCAGTTACCCCTCTGAAAGCCATGTGCTCAGGGCCCATGACTGGGCAATATTTAGCCATTGCTCTGTAAACCTAAAGCCAGGCTCTAGCTCTAACTTTTTTATAGGTCAGCCAAGGTCCAGATAAGGATGTTGGTATACTTGCTGAACCACTTTAGCTCCCTATGAGCACATATGACCTCAAATGCCCAGTTCTACGGTATATGCCTCTTTTCTGTGCAAACGTTCCAGGTCCTTCCTAGAACTCAGTGCCAGTACCTGCTCTGGCCCCACCCTCTGGAGGCAGCCTCCTTTGTAGCTCTCATTGCCTCACCCTGAACCTGCAGACCACTCAGCACAGCAGGATGGGACAGGAACTTTGGGGCCTGCTTGGAGCTAGAGTCTCTGTCTTGCACATCTGAGCCAAATATTGTATCTCTGTCACTCACTCGGATGGCTTAGCCTCGGGGGTGACCCTGATGCCACAGATAGGGTTGGAGAGCCCAAGGGAAGTTCAAAAGCTGTGGGTCACCACACCAGGGCCTATCCATTTCGTCTCTTGCCCTTCCCTCTTTGATACTCTTGATATATGTATCTGATATGTTTTGTCAGGCACTGGGTGACTCCCTGCCCCTGCTTCCTGCCTCCCCCACCCCCACCCCCAACCTCTCAGGGCAGGCAAGAGGATTCCAAGTCCTAACTAGGCACAAAGTCAACAGAGAAAGCAAAAGCACACTCAGGAATCAGTACTGACTGAGGTTCCCTGCACAGGCCTGGTCCCTGGGGTTTGTACTGTCGCAGTTAGCTGGAGGATTCTGGAAGGGCTGGGGAGCCAGGATGAGATTATGAGGCCATTAGGCTTGCCCAGAGTTAAGCTATGTCCCCGACTGTCTGTTACAG
Seq C2 exon
GTGCAGCAGCCTGTAAGACCCTGGGCAAGGGCACAGGTGAAGCCCGGCAGGCTCCACGGGCCCGAGGCGAGCGTCGAAGGCATACCATCACCAATGGTGTGGACTGCAGCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026955:ENSMUST00000114293:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.418 A=NA C2=0.781
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF114143=Suppressor_APC=PU(4.8=10.5)
Main Inclusion Isoform:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCAATGGCTACCTGACCTTC
R:
GGTCTTACAGGCTGCTGCAC
Band lengths:
357-2310
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types