MmuEX0017905 @ mm9
Exon Skipping
Gene
ENSMUSG00000038740 | Fam125b
Description
family with sequence similarity 125, member B [Source:MGI Symbol;Acc:MGI:1919793]
Coordinates
chr2:33585473-33607888:-
Coord C1 exon
chr2:33607829-33607888
Coord A exon
chr2:33591502-33591590
Coord C2 exon
chr2:33585473-33589051
Length
89 bp
Sequences
Splice sites
3' ss Seq
AAAGTTCCACTGCCCCACAGGCT
3' ss Score
6.31
5' ss Seq
CATGTGAGC
5' ss Score
5.03
Exon sequences
Seq C1 exon
ATGCAGCCCTTTGATCTCTTGGGAATCACCATCAAGTCTCTGGCAGAAATTGAAAAGGAG
Seq A exon
GCTTCCTTCTGCCCTGGGAGCTGGGCACAGCACGGCCTACTTCTGAACAGCTCAGGCAGCATCTCCAGCCCTGACCGCGTTGGTACCAT
Seq C2 exon
TACGAGTACAGCTTCCGCACCGAGCAGAGCGCAGCAGCTCGACTCCCACCCAGCCCTACCCGGTGCCAGCAGATCCCCCAATCCTGAGGAGCCCACAGCCTCCTGGGGGAGAAGACATCTCCTACCCGGTGCCCAGACTACTGATGGGGTGGCTGGGGTGAGAGTCACTCCCTCCCTCACCTGCCCGTTCTGCTTGCCCTGCTCACTGGCCACGAGACTCTGGGCAGCTGCTTGGTCATGTGTGGTCATCAGCTCGCCCGCTGAGACTTCCCTGCCTCCCTGGGACCGTTGTTCATAATTGTGACTAATGTATGTGCTGTTAGTGACCAGAGGCTCCTGTGTGATGACCACTTACCCCGCCAAGAAAGAAAACTCCTTCCTTACCTGGACTCACCCATGAGGGGCCCAGGCACACACTCCAGCCGCCCAGTGACACCCACTGGCTCCCCTCAACTGACCGTCACCTACCACAGAAATCCCACAAAGCCACTAGCTCCCTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000038740-'17-22,'17-21,18-22
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.167 C2=0.551
Domain overlap (PFAM):
C1:
PF102404=DUF2464=FE(7.5=100)
A:
PF102404=DUF2464=PD(1.2=10.0)
C2:
PF102404=DUF2464=PD(2.8=24.1)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGCCCTTTGATCTCTTGGG
R:
GAGATGTCTTCTCCCCCAGGA
Band lengths:
179-268
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: