MmuEX0017905 @ mm10
Exon Skipping
Gene
ENSMUSG00000038740 | Mvb12b
Description
multivesicular body subunit 12B [Source:MGI Symbol;Acc:MGI:1919793]
Coordinates
chr2:33729953-33752368:-
Coord C1 exon
chr2:33752309-33752368
Coord A exon
chr2:33735982-33736070
Coord C2 exon
chr2:33729953-33733531
Length
89 bp
Sequences
Splice sites
3' ss Seq
AAAGTTCCACTGCCCCACAGGCT
3' ss Score
6.31
5' ss Seq
CATGTGAGC
5' ss Score
5.03
Exon sequences
Seq C1 exon
ATGCAGCCCTTTGATCTCTTGGGAATCACCATCAAGTCTCTGGCAGAAATTGAAAAGGAG
Seq A exon
GCTTCCTTCTGCCCTGGGAGCTGGGCACAGCACGGCCTACTTCTGAACAGCTCAGGCAGCATCTCCAGCCCTGACCGCGTTGGTACCAT
Seq C2 exon
TACGAGTACAGCTTCCGCACCGAGCAGAGCGCAGCAGCTCGACTCCCACCCAGCCCTACCCGGTGCCAGCAGATCCCCCAATCCTGAGGAGCCCACAGCCTCCTGGGGGAGAAGACATCTCCTACCCGGTGCCCAGACTACTGATGGGGTGGCTGGGGTGAGAGTCACTCCCTCCCTCACCTGCCCGTTCTGCTTGCCCTGCTCACTGGCCACGAGACTCTGGGCAGCTGCTTGGTCATGTGTGGTCATCAGCTCGCCCGCTGAGACTTCCCTGCCTCCCTGGGACCGTTGTTCATAATTGTGACTAATGTATGTGCTGTTAGTGACCAGAGGCTCCTGTGTGATGACCACTTACCCCGCCAAGAAAGAAAACTCCTTCCTTACCTGGACTCACCCATGAGGGGCCCAGGCACACACTCCAGCCGCCCAGTGACACCCACTGGCTCCCCTCAACTGACCGTCACCTACCACAGAAATCCCACAAAGCCACTAGCTCCCTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000038740_MULTIEX1-5/5=4-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.167 C2=0.551
Domain overlap (PFAM):
C1:
PF102404=DUF2464=FE(7.5=100)
A:
PF102404=DUF2464=PD(1.2=10.0)
C2:
PF102404=DUF2464=PD(2.8=24.1)
Main Inclusion Isoform:
ENSMUST00000041555fB1585
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGCCCTTTGATCTCTTGGG
R:
GAGATGTCTTCTCCCCCAGGA
Band lengths:
179-268
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types