MmuALTD0012418-2/2 @ mm9
Alternative 5'ss
Gene
ENSMUSG00000035236 | Scai
Description
suppressor of cancer cell invasion [Source:MGI Symbol;Acc:MGI:2443716]
Coordinates
chr2:38988475-39045553:-
Coord C1 exon
chr2:39045509-39045553
Coord A exon
chr2:39045433-39045508
Coord C2 exon
chr2:38988475-38988606
Length
76 bp
Sequences
Splice sites
5' ss Seq
GTGGTGAGT
5' ss Score
8.95
3' ss Seq
TTTTTTTTTTTTTTTTACAGGAC
3' ss Score
12.9
Exon sequences
Seq C1 exon
ACTGTCTGGCACAGTGGAGAAACCACCCCGAAAACGGAAAAGCAG
Seq A exon
GTAAGGCAAATGCCTTCCTCTCTAGCTTCGTGTTTTTCCTGTTTGCTTGGCTGCCCCTGTGCTGCATAATTACGTG
Seq C2 exon
GACTGAATTTACTCTTAAAGAAACTATGTCCTCTGGAGGTGCTGAAGATGACATCCCACAGGGAGAGAGGAAGACAGTTACAGATTTTTGTTATCTTTTGGATAAATCCAAGCAACTGTTCAATGGCTTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000035236-1-3,2-3-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.979 A=NA C2=0.444
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF120703=DUF3550=PU(2.8=31.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGCACAGTGGAGAAACC
R:
AGCCATTGAACAGTTGCTTGGA
Band lengths:
167-243
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: