MmuALTD0012418-2/2 @ mm10
Alternative 5'ss
Gene
ENSMUSG00000035236 | Scai
Description
suppressor of cancer cell invasion [Source:MGI Symbol;Acc:MGI:2443716]
Coordinates
chr2:39132955-39190033:-
Coord C1 exon
chr2:39189989-39190033
Coord A exon
chr2:39189913-39189988
Coord C2 exon
chr2:39132955-39133086
Length
76 bp
Sequences
Splice sites
5' ss Seq
GTGGTGAGT
5' ss Score
8.95
3' ss Seq
TTTTTTTTTTTTTTTTACAGGAC
3' ss Score
12.9
Exon sequences
Seq C1 exon
ACTGTCTGGCACAGTGGAGAAACCACCCCGAAAACGGAAAAGCAG
Seq A exon
GTAAGGCAAATGCCTTCCTCTCTAGCTTCGTGTTTTTCCTGTTTGCTTGGCTGCCCCTGTGCTGCATAATTACGTG
Seq C2 exon
GACTGAATTTACTCTTAAAGAAACTATGTCCTCTGGAGGTGCTGAAGATGACATCCCACAGGGAGAGAGGAAGACAGTTACAGATTTTTGTTATCTTTTGGATAAATCCAAGCAACTGTTCAATGGCTTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000035236-1-3,2-3-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.973 A=NA C2=0.444
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF120703=DUF3550=PU(2.8=31.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGCACAGTGGAGAAACC
R:
AGCCATTGAACAGTTGCTTGGA
Band lengths:
167-243
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types