RnoALTD0026615-2/2 @ rn6
Alternative 5'ss
Gene
ENSRNOG00000025278 | Scai
Description
suppressor of cancer cell invasion [Source:RGD Symbol;Acc:1594720]
Coordinates
chr3:23421455-23473492:-
Coord C1 exon
chr3:23473448-23473492
Coord A exon
chr3:23473369-23473447
Coord C2 exon
chr3:23421455-23421586
Length
79 bp
Sequences
Splice sites
5' ss Seq
GTGGTGAGT
5' ss Score
8.95
3' ss Seq
GAGTATATATTTTTTTACAGGAC
3' ss Score
8.33
Exon sequences
Seq C1 exon
ACTGTCTGGCACAGTGGAGAAACCACCTCGAAAACGGAAAAGCAG
Seq A exon
GTAAGGCAAATAAATGCCTTCCTCTCTAGCTTCGTGTTTTTCTGCTTGCTTGACTGCCCCTGTGCTGCATAATTGCGTG
Seq C2 exon
GACTGAATTTACTCTTAAAGAAACCATGTCCTCTGGAGGTGCTGAAGATGATATCCCACAGGGAGAGAGGAAGACAGTTACAGATTTCTGTTATCTTTTGGATAAATCCAAGCAACTGTTTAATGGCTTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000025278-3-7,4-7-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.444
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF120703=DUF3550=PU(2.8=31.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGCACAGTGGAGAAACC
R:
AGCCATTAAACAGTTGCTTGGA
Band lengths:
167-246
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]