MmuEX6100203 @ mm9
Exon Skipping
Gene
ENSMUSG00000039678 | Tbc1d13
Description
TBC1 domain family, member 13 [Source:MGI Symbol;Acc:MGI:2385326]
Coordinates
chr2:29992802-29997941:+
Coord C1 exon
chr2:29992802-29992901
Coord A exon
chr2:29995995-29996077
Coord C2 exon
chr2:29997782-29997941
Length
83 bp
Sequences
Splice sites
3' ss Seq
GCTTTTCCCTCTCTTCACAGCCT
3' ss Score
10.87
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
Exon sequences
Seq C1 exon
GGGGCTCTATTCGCAGTTCCTGAGAGAGATGATTATCCAGCCTGGCATTGCCAAGGCCAACATGGGTGTATTCAGGGAGGATGTGACCTTTGAGGACCAT
Seq A exon
CCTCTGAACCCAAACCCTGACAGCAGGTGGAACACATATTTTAAGGACAACGAGGTGCTACTCCAGATTGACAAAGATGTCAG
Seq C2 exon
GAGGTTGTGCCCAGATATATCTTTCTTCCAAAGAGCCACTGAGTACCCCTGCCTGCTCATCCTGGACCCGCAAAATGAGTTTGAGACCCTTCGTAAGCGGGTGGAGCAGACGACACTGAAGTCTCAGACGGTGGCCAGGAATCGAAGCGGGGTTACAAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000039678-'11-11,'11-10,13-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.071 C2=0.259
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGCTCTATTCGCAGTTCCTG
R:
CATTTTGCGGGTCCAGGATGA
Band lengths:
176-259
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: