GgaEX6015125 @ galGal3
Exon Skipping
Gene
ENSGALG00000004645 | TBC1D13
Description
NA
Coordinates
chr17:5894957-5896728:+
Coord C1 exon
chr17:5894957-5895056
Coord A exon
chr17:5896336-5896418
Coord C2 exon
chr17:5896569-5896728
Length
83 bp
Sequences
Splice sites
3' ss Seq
TGTCTTGTTTATCTCTCCAGCCC
3' ss Score
8.8
5' ss Seq
CAGGTGTGT
5' ss Score
6.99
Exon sequences
Seq C1 exon
GGATCTGTATTCCCAGTTCCTAAAAGAGATGATTATTCAGCCTGGGATCGCCAAAGCCAACCTCGGCGTCTCAAGGGAAGATGTCACCTTAGAGGATCAC
Seq A exon
CCCCTCAATCCAAACCCAGACAGCCGGTGGAATACTTACTTCAAAGACAACGAGGTGCTCCTCCAGATAGACAAAGACGTCAG
Seq C2 exon
GAGGCTGTACCCCGACATGGCATTCTTCCAGCGCCCGACCGACTACCCCTGCCTTCTAATCCTGGACCCCCAAAATGAGTTTGAGACGCTGCGTAAGCGGGTGGAGCAGACCACGCTGAAGTCCCAGACGGTGGCACGGAACCGCAGCGGGGTTACAAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004645-'5-8,'5-6,6-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.147 A=0.143 C2=0.204
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTATTCAGCCTGGGATCGCC
R:
GCTTACGCAGCGTCTCAAACT
Band lengths:
167-250
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]