BtaEX6046531 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000012480 | TBC1D13
Description
Bos taurus TBC1 domain family, member 13 (TBC1D13), mRNA. [Source:RefSeq mRNA;Acc:NM_001206715]
Coordinates
chr11:99301673-99304613:+
Coord C1 exon
chr11:99301673-99301772
Coord A exon
chr11:99302650-99302732
Coord C2 exon
chr11:99304454-99304613
Length
83 bp
Sequences
Splice sites
3' ss Seq
CGGCTCATTTTCCCCCACAGCCT
3' ss Score
9.04
5' ss Seq
CCGGTGAGC
5' ss Score
8.69
Exon sequences
Seq C1 exon
GGAGCTGTATTCTCAGTTCCTGAGGGAAATGATCATCCAGCCTGGCATCGCCAAGGCCAACATGGGTGTGTCCAGGGAGGATGTGACCTTTGAGGACCAT
Seq A exon
CCTCTGAACCCCAACCCTGACAGCCGGTGGAACACGTACTTCAGGGACAACGAGGTGCTGCTGCAGATCGACAAAGATGTCCG
Seq C2 exon
GAGGTTGTGTCCAGACATATCCTTCTTCCAGAGGGCCACCGAGTACCCCTGCCTCCTCATCCTGGATCCTCAGAATGAATTCGAGACCCTTCGTAAGCGGGTGGAGCAGACGACCCTGAAATCCCAGACGGTGGCTCGGAACCGGAGCGGCGTCACAAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012480-'9-8,'9-7,10-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.147 A=0.107 C2=0.278
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAGGCCAACATGGGTGTGTC
R:
GATTTCAGGGTCGTCTGCTCC
Band lengths:
172-255
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]