HsaEX6063345 @ hg38
Exon Skipping
Gene
ENSG00000107021 | TBC1D13
Description
TBC1 domain family member 13 [Source:HGNC Symbol;Acc:HGNC:25571]
Coordinates
chr9:128788334-128797214:+
Coord C1 exon
chr9:128788334-128788407
Coord A exon
chr9:128792492-128792574
Coord C2 exon
chr9:128797055-128797214
Length
83 bp
Sequences
Splice sites
3' ss Seq
ATCTTCATTTCTCCCCACAGCCA
3' ss Score
10.84
5' ss Seq
CCGGTAGGC
5' ss Score
7.85
Exon sequences
Seq C1 exon
AATTGCAGATTTCCAGGATGTCCTGAAGGAGCCCTCAATTGCATTGGAAAAGCTGCGGGAACTCAGCTTTAGTG
Seq A exon
CCACTCAACCCCAACCCTGACAGCCGGTGGAACACGTACTTCAAGGACAACGAGGTGCTGCTGCAGATCGACAAAGATGTCCG
Seq C2 exon
GAGGTTGTGCCCAGACATTTCCTTCTTCCAGAGGGCCACTGACTACCCTTGCCTCCTCATCCTGGACCCCCAGAATGAGTTTGAAACCCTTCGTAAGAGAGTGGAACAGACAACACTGAAATCTCAGACGGTGGCCCGGAACCGGAGTGGGGTCACAAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000107021_MULTIEX1-5/5=C1-C2
Average complexity
C2*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.107 C2=0.198
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0056613=RabGAP-TBC=PU(31.9=53.7)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCGGGAACTCAGCTTTAGTG
R:
ATTTGTGACCCCACTCCGGTT
Band lengths:
181-264
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains