MmuEX6100203 @ mm10
Exon Skipping
Gene
ENSMUSG00000039678 | Tbc1d13
Description
TBC1 domain family, member 13 [Source:MGI Symbol;Acc:MGI:2385326]
Coordinates
chr2:30137282-30142421:+
Coord C1 exon
chr2:30137282-30137381
Coord A exon
chr2:30140475-30140557
Coord C2 exon
chr2:30142262-30142421
Length
83 bp
Sequences
Splice sites
3' ss Seq
GCTTTTCCCTCTCTTCACAGCCT
3' ss Score
10.87
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
Exon sequences
Seq C1 exon
GGGGCTCTATTCGCAGTTCCTGAGAGAGATGATTATCCAGCCTGGCATTGCCAAGGCCAACATGGGTGTATTCAGGGAGGATGTGACCTTTGAGGACCAT
Seq A exon
CCTCTGAACCCAAACCCTGACAGCAGGTGGAACACATATTTTAAGGACAACGAGGTGCTACTCCAGATTGACAAAGATGTCAG
Seq C2 exon
GAGGTTGTGCCCAGATATATCTTTCTTCCAAAGAGCCACTGAGTACCCCTGCCTGCTCATCCTGGACCCGCAAAATGAGTTTGAGACCCTTCGTAAGCGGGTGGAGCAGACGACACTGAAGTCTCAGACGGTGGCCAGGAATCGAAGCGGGGTTACAAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000039678-'10-22,'10-15,17-22=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.071 C2=0.259
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGCTCTATTCGCAGTTCCTG
R:
CATTTTGCGGGTCCAGGATGA
Band lengths:
176-259
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types