RnoEX0088793 @ rn6
Exon Skipping
Gene
ENSRNOG00000015970 | Tbc1d13
Description
TBC1 domain family, member 13 [Source:RGD Symbol;Acc:1591937]
Coordinates
chr3:8705173-8709263:+
Coord C1 exon
chr3:8705173-8705272
Coord A exon
chr3:8707316-8707398
Coord C2 exon
chr3:8709104-8709263
Length
83 bp
Sequences
Splice sites
3' ss Seq
GCTTGTCCCTCTCTTCACAGCCC
3' ss Score
10.65
5' ss Seq
CCGGTAAGA
5' ss Score
10.1
Exon sequences
Seq C1 exon
GGGGCTTTATTCACAGTTCCTGAGAGAGATGATTATTCAGCCTGGCATTGCGAAGGCCAACATGGGTGTGTCCAGAGAGGACGTGACCTTTGAGGACCAT
Seq A exon
CCCCTGAACCCAAACCCTGACAGCAGGTGGAACACGTATTTTAAGGACAACGAGGTGCTATTGCAGATTGACAAAGATGTCCG
Seq C2 exon
GAGGCTGTGCCCAGATATATCCTTCTTCCAAAGAGCCACTGAGTACCCCTGCCTCCTCATCCTGGACCCGCAGAATGAGTTTGAGACCCTTCGTAAGCGTGTGGAGCAGACGACACTGAAGTCTCAGACGGTGGCCCGGAACCGAAGCGGGGTCACAAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000015970-'10-9,'10-5,11-9
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.147 A=0.107 C2=0.296
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAACATGGGTGTGTCCAGAG
R:
GACTTCAGTGTCGTCTGCTCC
Band lengths:
167-250
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]