HsaEX6063345 @ hg19
Exon Skipping
Gene
ENSG00000107021 | TBC1D13
Description
TBC1 domain family, member 13 [Source:HGNC Symbol;Acc:25571]
Coordinates
chr9:131553873-131559493:+
Coord C1 exon
chr9:131553873-131553972
Coord A exon
chr9:131554771-131554853
Coord C2 exon
chr9:131559334-131559493
Length
83 bp
Sequences
Splice sites
3' ss Seq
ATCTTCATTTCTCCCCACAGCCA
3' ss Score
10.84
5' ss Seq
CCGGTAGGC
5' ss Score
7.85
Exon sequences
Seq C1 exon
GGAGCTGTATGCCCAGTTCCTGAGGGAAATGATCATCCAGCCTGGCATTGCCAAGGCCAACATGGGTGTGTCCAGGGAGGATGTGACTTTTGAGGACCAT
Seq A exon
CCACTCAACCCCAACCCTGACAGCCGGTGGAACACGTACTTCAAGGACAACGAGGTGCTGCTGCAGATCGACAAAGATGTCCG
Seq C2 exon
GAGGTTGTGCCCAGACATTTCCTTCTTCCAGAGGGCCACTGACTACCCTTGCCTCCTCATCCTGGACCCCCAGAATGAGTTTGAAACCCTTCGTAAGAGAGTGGAACAGACAACACTGAAATCTCAGACGGTGGCCCGGAACCGGAGTGGGGTCACAAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000107021-'5-6,'5-5,6-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.137 A=0.107 C2=0.148
Domain overlap (PFAM):
C1:
PF0056613=RabGAP-TBC=FE(30.3=100)
A:
PF0056613=RabGAP-TBC=FE(24.8=100)
C2:
PF0056613=RabGAP-TBC=PD(16.5=33.3),PF0056613=RabGAP-TBC=PU(31.9=53.7)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCTGTATGCCCAGTTCCTGA
R:
CAAACTCATTCTGGGGGTCCA
Band lengths:
181-264
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)