MmuEX6102235 @ mm9
Exon Skipping
Gene
ENSMUSG00000042410 | Agps
Description
alkylglycerone phosphate synthase [Source:MGI Symbol;Acc:MGI:2443065]
Coordinates
chr2:75740975-75747757:+
Coord C1 exon
chr2:75740975-75741036
Coord A exon
chr2:75742916-75743005
Coord C2 exon
chr2:75747658-75747757
Length
90 bp
Sequences
Splice sites
3' ss Seq
TATTCAACTATCTTTTCTAGGGT
3' ss Score
8.36
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
GATTTGGGTTTGGAATACTATGTAATAGGAGAATCTTTTGAGACTTCTGCTCCTTGGGACAG
Seq A exon
GGTTATAGATCTGTGTAGAAATGTAAAGGAGAGGATAAGAAGGGAATGCAAAGAAAGGGGAGTTCAGTTCGCACCTCTTTCTACGTGCAG
Seq C2 exon
GGTGACACAGACTTATGATGCAGGTGCATGTATCTACTTCTATTTTGCCTTTAACTACAGGGGAATTAGTGACCCACTGACCGTGTTTGAACACACTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000042410-'22-20,'22-18,23-20=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0291314=FAD-oxidase_C=FE(7.3=100)
A:
PF0291314=FAD-oxidase_C=FE(10.9=100)
C2:
PF0291314=FAD-oxidase_C=FE(12.0=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGGTTTGGAATACTATGTAATAGGA
R:
CACGGTCAGTGGGTCACTAAT
Band lengths:
143-233
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: