RnoEX0007980 @ rn6
Exon Skipping
Gene
ENSRNOG00000001547 | Agps
Description
alkylglycerone phosphate synthase [Source:RGD Symbol;Acc:620364]
Coordinates
chr3:62721360-62732621:+
Coord C1 exon
chr3:62721360-62721421
Coord A exon
chr3:62722871-62722960
Coord C2 exon
chr3:62732522-62732621
Length
90 bp
Sequences
Splice sites
3' ss Seq
TATTCAATTATCTTTCGTAGGGT
3' ss Score
7.31
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
GATTTGGGTTTGGAATACTATGTAGTAGGAGAATCTTTTGAGACTTCTGCTCCTTGGGACAG
Seq A exon
GGTTATAGATCTGTGTAGAAATGTAAAAGAAAGGATAAGAAGGGAATGCAAAGAAAGGGGAGTTCAGTTTGCGCCTCTTTCTACGTGCAG
Seq C2 exon
GGTGACGCAGACTTACGATGCAGGTGCATGTATCTACTTCTATTTTGCCTTTAACTACAGGGGAATTAGTGACCCACTGACTGTGTTTGAACAGACTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000001547_MULTIEX1-1/4=C1-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0291314=FAD-oxidase_C=FE(10.8=100)
A:
PF0291314=FAD-oxidase_C=FE(10.9=100)
C2:
PF0291314=FAD-oxidase_C=FE(12.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGGGTTTGGAATACTATGTAGTAGG
R:
CTCAGTCTGTTCAAACACAGTCAGT
Band lengths:
159-249
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]