GgaEX1007019 @ galGal3
Exon Skipping
Gene
ENSGALG00000009236 | AGPS
Description
NA
Coordinates
chr7:16828633-16831184:-
Coord C1 exon
chr7:16831123-16831184
Coord A exon
chr7:16829177-16829266
Coord C2 exon
chr7:16828633-16828732
Length
90 bp
Sequences
Splice sites
3' ss Seq
CAATATGTGTTCTGTTACAGGGT
3' ss Score
9.24
5' ss Seq
CAGGTAAGC
5' ss Score
9.88
Exon sequences
Seq C1 exon
GATCTGGGCCTGGATTACTATGTAATAGGAGAGTCGTTTGAGACATCTGTTCCTTGGGATAG
Seq A exon
GGTTTTAGACCTCTGCAGGAATGTGAAGGAAAGGATAGTAAGAGAATGCAAAGAAAAAGGTGTTCAATTTGCTCCCTTTTCCACCTGCAG
Seq C2 exon
GGTTACACAGACTTACGATGCAGGTGCATGTGTCTATTTCTACTTTGCCTTTAACTACAGAGGGATTAGTGATCCTATTCATGTCTATGAAGAAATTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009236-'22-31,'22-29,23-31=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0291314=FAD-oxidase_C=FE(7.3=100)
A:
PF0291314=FAD-oxidase_C=FE(10.9=100)
C2:
PF0291314=FAD-oxidase_C=FE(12.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATCTGGGCCTGGATTACTATGT
R:
ATCACTAATCCCTCTGTAGTTAAAGG
Band lengths:
135-225
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]