HsaEX6016840 @ hg38
Exon Skipping
Gene
ENSG00000018510 | AGPS
Description
alkylglycerone phosphate synthase [Source:HGNC Symbol;Acc:HGNC:327]
Coordinates
chr2:177507970-177521368:+
Coord C1 exon
chr2:177507970-177508031
Coord A exon
chr2:177513819-177513908
Coord C2 exon
chr2:177521269-177521368
Length
90 bp
Sequences
Splice sites
3' ss Seq
ATTCATTTATCTTTTTTTAGGGT
3' ss Score
9.8
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
Exon sequences
Seq C1 exon
GACTTGGCTTTGGAATACTATGTATTAGGAGAATCTTTTGAGACTTCTGCTCCTTGGGACAG
Seq A exon
GGTGGTAGATCTCTGTAGAAATGTAAAAGAAAGAATAACAAGGGAATGCAAAGAGAAGGGTGTTCAGTTTGCTCCTTTTTCTACATGCAG
Seq C2 exon
GGTGACGCAGACTTACGATGCAGGTGCTTGTATCTACTTCTATTTTGCCTTTAACTACAGGGGAATTAGTGACCCACTGACCGTATTTGAACAAACTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000018510_MULTIEX1-18/19=17-19
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.009
Domain overlap (PFAM):
C1:
PF0291314=FAD-oxidase_C=FE(7.3=100)
A:
PF0291314=FAD-oxidase_C=FE(10.9=100)
C2:
PF0291314=FAD-oxidase_C=FE(12.0=100)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACTTGGCTTTGGAATACTATGTATT
R:
CAGTTTGTTCAAATACGGTCAGTGG
Band lengths:
160-250
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains