MmuEX6102235 @ mm10
Exon Skipping
Gene
ENSMUSG00000042410 | Agps
Description
alkylglycerone phosphate synthase [Source:MGI Symbol;Acc:MGI:2443065]
Coordinates
chr2:75902918-75909700:+
Coord C1 exon
chr2:75902918-75902979
Coord A exon
chr2:75904859-75904948
Coord C2 exon
chr2:75909601-75909700
Length
90 bp
Sequences
Splice sites
3' ss Seq
TATTCAACTATCTTTTCTAGGGT
3' ss Score
8.36
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
GATTTGGGTTTGGAATACTATGTAATAGGAGAATCTTTTGAGACTTCTGCTCCTTGGGACAG
Seq A exon
GGTTATAGATCTGTGTAGAAATGTAAAGGAGAGGATAAGAAGGGAATGCAAAGAAAGGGGAGTTCAGTTCGCACCTCTTTCTACGTGCAG
Seq C2 exon
GGTGACACAGACTTATGATGCAGGTGCATGTATCTACTTCTATTTTGCCTTTAACTACAGGGGAATTAGTGACCCACTGACCGTGTTTGAACACACTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000042410_MULTIEX2-5/5=4-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0291314=FAD-oxidase_C=FE(7.3=100)
A:
PF0291314=FAD-oxidase_C=FE(10.9=100)
C2:
PF0291314=FAD-oxidase_C=FE(12.0=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGGTTTGGAATACTATGTAATAGGA
R:
CACGGTCAGTGGGTCACTAAT
Band lengths:
143-233
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types