MmuEX6102236 @ mm10
Exon Skipping
Gene
ENSMUSG00000042410 | Agps
Description
alkylglycerone phosphate synthase [Source:MGI Symbol;Acc:MGI:2443065]
Coordinates
chr2:75900182-75909700:+
Coord C1 exon
chr2:75900182-75900251
Coord A exon
chr2:75902918-75902979
Coord C2 exon
chr2:75909601-75909700
Length
62 bp
Sequences
Splice sites
3' ss Seq
TGATTTGTGTGTCTTTACAGGAT
3' ss Score
11.76
5' ss Seq
CAGGTAAAA
5' ss Score
8.59
Exon sequences
Seq C1 exon
TGGTCTGGCTGCTGGAGAAGATAACGGTCAGAGGGGTTATTTGCTGACTTATGTCATTGCATATATTCGT
Seq A exon
GATTTGGGTTTGGAATACTATGTAATAGGAGAATCTTTTGAGACTTCTGCTCCTTGGGACAG
Seq C2 exon
GGTGACACAGACTTATGATGCAGGTGCATGTATCTACTTCTATTTTGCCTTTAACTACAGGGGAATTAGTGACCCACTGACCGTGTTTGAACACACTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000042410_MULTIEX2-4/5=3-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0291314=FAD-oxidase_C=FE(8.4=100)
A:
PF0291314=FAD-oxidase_C=FE(7.3=100)
C2:
PF0291314=FAD-oxidase_C=FE(12.0=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCTGCTGGAGAAGATAACGG
R:
AGTGGGTCACTAATTCCCCTGT
Band lengths:
142-204
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types