HsaEX0003140 @ hg19
Exon Skipping
Gene
ENSG00000018510 | AGPS
Description
alkylglycerone phosphate synthase [Source:HGNC Symbol;Acc:327]
Coordinates
chr2:178284997-178386096:+
Coord C1 exon
chr2:178284997-178285086
Coord A exon
chr2:178372698-178372759
Coord C2 exon
chr2:178385997-178386096
Length
62 bp
Sequences
Splice sites
3' ss Seq
TTCTGTTTGTGTCTTAATAGGAC
3' ss Score
10.47
5' ss Seq
CAGGTAAAA
5' ss Score
8.59
Exon sequences
Seq C1 exon
GCAAGAAGTTATGAAATGGAATGGATGGGGATATAATGATTCTAAATTCATCTTCAATAAGAAGGGCCAAATTGAATTGACTGGGAAAAG
Seq A exon
GACTTGGCTTTGGAATACTATGTATTAGGAGAATCTTTTGAGACTTCTGCTCCTTGGGACAG
Seq C2 exon
GGTGACGCAGACTTACGATGCAGGTGCTTGTATCTACTTCTATTTTGCCTTTAACTACAGGGGAATTAGTGACCCACTGACCGTATTTGAACAAACTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000018510_MULTIEX1-14/16=C1-16
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.032 A=0.000 C2=0.026
Domain overlap (PFAM):
C1:
PF0291314=FAD-oxidase_C=PU(1.4=3.2)
A:
PF0291314=FAD-oxidase_C=FE(7.3=100)
C2:
PF0291314=FAD-oxidase_C=FE(12.0=100)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAAATGGAATGGATGGGGAT
R:
TCCCCTGTAGTTAAAGGCAAAA
Band lengths:
143-205
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)