DreEX0012128 @ danRer10
Exon Skipping
Gene
ENSDARG00000042821 | agps
Description
alkylglycerone phosphate synthase [Source:ZFIN;Acc:ZDB-GENE-031118-14]
Coordinates
chr9:1596836-1599649:-
Coord C1 exon
chr9:1599580-1599649
Coord A exon
chr9:1598732-1598793
Coord C2 exon
chr9:1596836-1596925
Length
62 bp
Sequences
Splice sites
3' ss Seq
TATGGTTTGTGTGTTTGCAGGAT
3' ss Score
9.67
5' ss Seq
CAGGTGTGT
5' ss Score
6.99
Exon sequences
Seq C1 exon
GGGTCTGGCAGCAGGAGAGGACAACGGTCAGAGGGGCTACATGCTGACGTTTGTGATCGCCTATCTGCGG
Seq A exon
GATTTGGGAATGGATTACTATGTGATCGGTGAGTCGTTTGAGACGTCTGTGCCTTGGGACAG
Seq C2 exon
GGTGTTGGATTTGTGTCGAAATGTAAAGGAGAGGATAATAAGAGAGTGTAAAGAGAGAGGAGTGCAGTTCCCACCGCTGTCCACATGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000042821-'19-18,'19-17,21-18
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0291314=FAD-oxidase_C=FE(10.4=100)
A:
PF0291314=FAD-oxidase_C=FE(7.3=100)
C2:
PF0291314=FAD-oxidase_C=FE(10.9=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGGAGAGGACAACGGTCAGA
R:
TGGGAACTGCACTCCTCTCTC
Band lengths:
132-194
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]